PubMed Mentions

The links below are to publications on PubMed referring to XNAT. This list is gathered weekly from PubMed automatically.

Publication/References
Efficient, Distributed and Interactive Neuroimaging Data Analysis Using the LONI Pipeline. Description: Dinov, Ivo D, et al. Efficient, Distributed and Interactive Neuroimaging Data Analysis Using the LONI Pipeline. ''Front Neuroinform''. 2009; '''3''': 22
Neuroscience Data Integration through Mediation: An (F)BIRN Case Study. Description: Ashish, Naveen, et al. Neuroscience Data Integration through Mediation: An (F)BIRN Case Study. ''Front Neuroinform''. 2010; '''4''': 118
Neuroimaging study designs, computational analyses and data provenance using the LONI pipeline. Description: Dinov, Ivo, et al. Neuroimaging study designs, computational analyses and data provenance using the LONI pipeline. ''PLoS One''. 2010 Sep 28; '''5''' (9):
An informatics framework for testing data integrity and correctness of federated biomedical databases. Description: Kim, Mijung, et al. An informatics framework for testing data integrity and correctness of federated biomedical databases. ''AMIA Jt Summits Transl Sci Proc''. 2011; '''2011''': 22-6
Data management practices for collaborative research. Description: Schmitt, Charles P, et al. Data management practices for collaborative research. ''Front Psychiatry''. 2011; '''2''': 47
Data ontology and an information system realization for web-based management of image measurements. Description: Prodanov, Dimiter. Data ontology and an information system realization for web-based management of image measurements. ''Front Neuroinform''. 2011; '''5''': 25
Informatics and data mining tools and strategies for the human connectome project. Description: Marcus, Daniel S, et al. Informatics and data mining tools and strategies for the human connectome project. ''Front Neuroinform''. 2011; '''5''': 4
A simple tool for neuroimaging data sharing. Description: Haselgrove, Christian, et al. A simple tool for neuroimaging data sharing. ''Front Neuroinform''. 2014; '''8''': 52
Automatic analysis (aa): efficient neuroimaging workflows and parallel processing using Matlab and XML. Description: Cusack, Rhodri, et al. Automatic analysis (aa): efficient neuroimaging workflows and parallel processing using Matlab and XML. ''Front Neuroinform''. 2014; '''8''': 90
Data dictionary services in XNAT and the Human Connectome Project. Description: Herrick, Rick, et al. Data dictionary services in XNAT and the Human Connectome Project. ''Front Neuroinform''. 2014; '''8''': 65
Web based tools for visualizing imaging data and development of XNATView, a zero footprint image viewer. Description: Gutman, David A, et al. Web based tools for visualizing imaging data and development of XNATView, a zero footprint image viewer. ''Front Neuroinform''. 2014; '''8''': 53
Optimization of anesthesia protocol for resting-state fMRI in mice based on differential effects of anesthetics on functional connectivity patterns. Description: Grandjean, Joanes, et al. Optimization of anesthesia protocol for resting-state fMRI in mice based on differential effects of anesthetics on functional connectivity patterns. ''Neuroimage''. 2014 Nov 15; '''102 Pt 2''': 838-47
Brain Genomics Superstruct Project initial data release with structural, functional, and behavioral measures. Description: Holmes, Avram J, et al. Brain Genomics Superstruct Project initial data release with structural, functional, and behavioral measures. ''Sci Data''. 2015; '''2''': 150031
Data Citation in Neuroimaging: Proposed Best Practices for Data Identification and Attribution. Description: Honor, Leah B, et al. Data Citation in Neuroimaging: Proposed Best Practices for Data Identification and Attribution. ''Front Neuroinform''. 2016; '''10''': 34
The Northwestern University Neuroimaging Data Archive (NUNDA). Description: Alpert, Kathryn, et al. The Northwestern University Neuroimaging Data Archive (NUNDA). ''Neuroimage''. 2016 Jan 1; '''124''' (Pt B):1131-1136
Harmonizing DTI measurements across scanners to examine the development of white matter microstructure in 803 adolescents of the NCANDA study. Description: Pohl, Kilian M, et al. Harmonizing DTI measurements across scanners to examine the development of white matter microstructure in 803 adolescents of the NCANDA study. ''Neuroimage''. 2016 Apr 15; '''130''': 194-213
Extending XNAT Platform with an Incremental Semantic Framework. Description: Timon, Santiago, et al. Extending XNAT Platform with an Incremental Semantic Framework. ''Front Neuroinform''. 2017; '''11''': 57
Study protocol: Insight 46 - a neuroscience sub-study of the MRC National Survey of Health and Development. Description: Lane, Christopher A, et al. Study protocol: Insight 46 - a neuroscience sub-study of the MRC National Survey of Health and Development. ''BMC Neurol''. 2017 Apr 18; '''17''' (1):75
Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group. Description: Shenkin, Susan D, et al. Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group. ''Neuroimage''. 2017 Jun; '''153''': 399-409
The CAMH Neuroinformatics Platform: A Hospital-Focused Brain-CODE Implementation. Description: Rotenberg, David J, et al. The CAMH Neuroinformatics Platform: A Hospital-Focused Brain-CODE Implementation. ''Front Neuroinform''. 2018; '''12''': 77
A Performant Web-Based Visualization, Assessment, and Collaboration Tool for Multidimensional Biosignals. Description: Beier, Maximilian, et al. A Performant Web-Based Visualization, Assessment, and Collaboration Tool for Multidimensional Biosignals. ''Front Neuroinform''. 2019; '''13''': 65
Multicenter CT phantoms public dataset for radiomics reproducibility tests. Description: Kalendralis, Petros, et al. Multicenter CT phantoms public dataset for radiomics reproducibility tests. ''Med Phys''. 2019 Mar; '''46''' (3):1512-1518
Incidental findings on brain imaging and blood tests: results from the first phase of Insight 46, a prospective observational substudy of the 1946 British birth cohort. Description: Keuss, Sarah E, et al. Incidental findings on brain imaging and blood tests: results from the first phase of Insight 46, a prospective observational substudy of the 1946 British birth cohort. ''BMJ Open''. 2019 Jul 31; '''9''' (7):e029502
Rxnat: An Open-Source R Package for XNAT-Based Repositories. Description: Gherman, Adrian, et al. Rxnat: An Open-Source R Package for XNAT-Based Repositories. ''Front Neuroinform''. 2020; '''14''': 572068
Prognostic imaging biomarkers for diabetic kidney disease (iBEAt): study protocol. Description: Gooding, Kim M, et al. Prognostic imaging biomarkers for diabetic kidney disease (iBEAt): study protocol. ''BMC Nephrol''. 2020 Jun 29; '''21''' (1):242
Multicenter randomized clinical trial of endovascular treatment for acute ischemic stroke. The effect of periprocedural medication: acetylsalicylic acid, unfractionated heparin, both, or neither (MR CLEAN-MED). Rationale and study design. Description: Chalos, Vicky, et al. Multicenter randomized clinical trial of endovascular treatment for acute ischemic stroke. The effect of periprocedural medication: acetylsalicylic acid, unfractionated heparin, both, or neither (MR CLEAN-MED). Rationale and study design. ''Trials''. 2020 Jul 14; '''21''' (1):644
Radiomics and Deep Learning from Research to Clinical Workflow: Neuro-Oncologic Imaging. Description: Park, Ji Eun, et al. Radiomics and Deep Learning from Research to Clinical Workflow: Neuro-Oncologic Imaging. ''Korean J Radiol''. 2020 Oct; '''21''' (10):1126-1137
OCTA Multilayer and Multisector Peripapillary Microvascular Modeling for Diagnosing and Staging of Glaucoma. Description: Andrade De Jesus, Danilo, et al. OCTA Multilayer and Multisector Peripapillary Microvascular Modeling for Diagnosing and Staging of Glaucoma. ''Transl Vis Sci Technol''. 2020 Nov; '''9''' (2):58
Automatic multispectral MRI segmentation of human hippocampal subfields: an evaluation of multicentric test-retest reproducibility. Description: Chiappiniello, Andrea, et al. Automatic multispectral MRI segmentation of human hippocampal subfields: an evaluation of multicentric test-retest reproducibility. ''Brain Struct Funct''. 2021 Jan; '''226''' (1):137-150
Brain/MINDS beyond human brain MRI project: A protocol for multi-level harmonization across brain disorders throughout the lifespan. Description: Koike, Shinsuke, et al. Brain/MINDS beyond human brain MRI project: A protocol for multi-level harmonization across brain disorders throughout the lifespan. ''Neuroimage Clin''. 2021; '''30''': 102600
Connectomics in Brain Aging and Dementia - The Background and Design of a Study of a Connectome Related to Human Disease. Description: Cohen, Ann D, et al. Connectomics in Brain Aging and Dementia - The Background and Design of a Study of a Connectome Related to Human Disease. ''Front Aging Neurosci''. 2021; '''13''': 669490
DataLad: distributed system for joint management of code, data, and their relationship. Description: Halchenko, Yaroslav O, et al. DataLad: distributed system for joint management of code, data, and their relationship. ''J Open Source Softw''. 2021; '''6''' (63):
Resting-State Functional Magnetic Resonance Imaging Networks as a Quantitative Metric for Impact of Neurosurgical Interventions. Description: Yang, Peter H, et al. Resting-State Functional Magnetic Resonance Imaging Networks as a Quantitative Metric for Impact of Neurosurgical Interventions. ''Front Neurosci''. 2021; '''15''': 665016
MR CLEAN-NO IV: intravenous treatment followed by endovascular treatment versus direct endovascular treatment for acute ischemic stroke caused by a proximal intracranial occlusion-study protocol for a randomized clinical trial. Description: Treurniet, Kilian M, et al. MR CLEAN-NO IV: intravenous treatment followed by endovascular treatment versus direct endovascular treatment for acute ischemic stroke caused by a proximal intracranial occlusion-study protocol for a randomized clinical trial. ''Trials''. 2021 Feb 15; '''22''' (1):141
"Real-world" radiomics from multi-vendor MRI: an original retrospective study on the prediction of nodal status and disease survival in breast cancer, as an exemplar to promote discussion of the wider issues. Description: Doran, Simon J, et al. "Real-world" radiomics from multi-vendor MRI: an original retrospective study on the prediction of nodal status and disease survival in breast cancer, as an exemplar to promote discussion of the wider issues. ''Cancer Imaging''. 2021 May 20; '''21''' (1):37
Evaluation of a CTA-based convolutional neural network for infarct volume prediction in anterior cerebral circulation ischaemic stroke. Description: Hokkinen, Lasse, et al. Evaluation of a CTA-based convolutional neural network for infarct volume prediction in anterior cerebral circulation ischaemic stroke. ''Eur Radiol Exp''. 2021 Jun 24; '''5''' (1):25
Performance of a 3D convolutional neural network in the detection of hypoperfusion at CT pulmonary angiography in patients with chronic pulmonary embolism: a feasibility study. Description: Vainio, Tuomas, et al. Performance of a 3D convolutional neural network in the detection of hypoperfusion at CT pulmonary angiography in patients with chronic pulmonary embolism: a feasibility study. ''Eur Radiol Exp''. 2021 Sep 24; '''5''' (1):45
Blockchain and artificial intelligence technology in e-Health. Description: Tagde, Priti, et al. Blockchain and artificial intelligence technology in e-Health. ''Environ Sci Pollut Res Int''. 2021 Oct; '''28''' (38):52810-52831
Safety and efficacy of losartan for the reduction of brain atrophy in clinically diagnosed Alzheimer's disease (the RADAR trial): a double-blind, randomised, placebo-controlled, phase 2 trial. Description: Kehoe, Patrick Gavin, et al. Safety and efficacy of losartan for the reduction of brain atrophy in clinically diagnosed Alzheimer's disease (the RADAR trial): a double-blind, randomised, placebo-controlled, phase 2 trial. ''Lancet Neurol''. 2021 Nov; '''20''' (11):895-906
Spatial patterns of tumour growth impact clonal diversification in a computational model and the TRACERx Renal study. Description: Fu, Xiao, et al. Spatial patterns of tumour growth impact clonal diversification in a computational model and the TRACERx Renal study. ''Nat Ecol Evol''. 2022 Jan; '''6''' (1):88-102
The Dual Mechanisms of Cognitive Control dataset, a theoretically-guided within-subject task fMRI battery. Description: Etzel, Joset A, et al. The Dual Mechanisms of Cognitive Control dataset, a theoretically-guided within-subject task fMRI battery. ''Sci Data''. 2022 Mar 29; '''9''' (1):114
A multi-site, multi-participant magnetoencephalography resting-state dataset to study dementia: The BioFIND dataset. Description: Vaghari, Delshad, et al. A multi-site, multi-participant magnetoencephalography resting-state dataset to study dementia: The BioFIND dataset. ''Neuroimage''. 2022 Sep; '''258''': 119344
New Therapeutics in Alzheimer's Disease Longitudinal Cohort study (NTAD): study protocol. Description: Lanskey, Juliette Helene, et al. New Therapeutics in Alzheimer's Disease Longitudinal Cohort study (NTAD): study protocol. ''BMJ Open''. 2022 Dec 15; '''12''' (12):e055135
Computed tomography and magnetic resonance imaging approaches to Graves' ophthalmopathy: a narrative review. Description: Luccas, Rafael, et al. Computed tomography and magnetic resonance imaging approaches to Graves' ophthalmopathy: a narrative review. ''Front Endocrinol (Lausanne)''. 2023; '''14''': 1277961
Interpretability of radiomics models is improved when using feature group selection strategies for predicting molecular and clinical targets in clear-cell renal cell carcinoma: insights from the TRACERx Renal study. Description: Orton, Matthew R, et al. Interpretability of radiomics models is improved when using feature group selection strategies for predicting molecular and clinical targets in clear-cell renal cell carcinoma: insights from the TRACERx Renal study. ''Cancer Imaging''. 2023 Aug 14; '''23''' (1):76
Assessment of longitudinal brain development using super-resolution magnetic resonance imaging following fetal surgery for open spina bifida. Description: Mufti, N, et al. Assessment of longitudinal brain development using super-resolution magnetic resonance imaging following fetal surgery for open spina bifida. ''Ultrasound Obstet Gynecol''. 2023 Nov; '''62''' (5):707-720
Factors influencing the reliability of a CT angiography-based deep learning method for infarct volume estimation. Description: Hokkinen, Lasse, et al. Factors influencing the reliability of a CT angiography-based deep learning method for infarct volume estimation. ''BJR Open''. 2024 Jan; '''6''' (1):tzae001
Image annotation and curation in radiology: an overview for machine learning practitioners. Description: Galbusera, Fabio, et al. Image annotation and curation in radiology: an overview for machine learning practitioners. ''Eur Radiol Exp''. 2024 Feb 6; '''8''' (1):11
Clinical application of machine learning models in patients with prostate cancer before prostatectomy. Description: Guerra, Adalgisa, et al. Clinical application of machine learning models in patients with prostate cancer before prostatectomy. ''Cancer Imaging''. 2024 Feb 8; '''24''' (1):24
The Human Connectome Project of adolescent anxiety and depression dataset. Description: Hubbard, N A, et al. The Human Connectome Project of adolescent anxiety and depression dataset. ''Sci Data''. 2024 Aug 2; '''11''' (1):837
Precision Network Modeling of TMS Across Individuals Suggests Therapeutic Targets and Potential for Improvement. Description: Sun, Wendy, et al. Precision Network Modeling of TMS Across Individuals Suggests Therapeutic Targets and Potential for Improvement. ''medRxiv''. 2024 Aug 16;
Evaluation of e-Lung automated quantitative computed tomography biomarkers in idiopathic pulmonary fibrosis. Description: George, Peter M, et al. Evaluation of e-Lung automated quantitative computed tomography biomarkers in idiopathic pulmonary fibrosis. ''ERJ Open Res''. 2024 Nov; '''10''' (6):