PubMed Mentions

The links below are to publications on PubMed referring to Brian simulator. This list is gathered weekly from PubMed automatically.

Publication/References
Location, location, location: how it affects the neighborhood (effect). Description: Whitney, Carol. Location, location, location: how it affects the neighborhood (effect). ''Brain Lang''. 2011 Sep; '''118''' (3):90-104
Neuronal morphology goes digital: a research hub for cellular and system neuroscience. Description: Parekh, Ruchi, et al. Neuronal morphology goes digital: a research hub for cellular and system neuroscience. ''Neuron''. 2013 Mar 20; '''77''' (6):1017-38
Computational modeling of epilepsy for an experimental neurologist. Description: Holt, Abbey B, et al. Computational modeling of epilepsy for an experimental neurologist. ''Exp Neurol''. 2013 Jun; '''244''': 75-86
Pronounced differences in signal processing and synaptic plasticity between piriform-hippocampal network stages: a prominent role for adenosine. Description: Trieu, Brian H, et al. Pronounced differences in signal processing and synaptic plasticity between piriform-hippocampal network stages: a prominent role for adenosine. ''J Physiol''. 2015 Jul 1; '''593''' (13):2889-907
A model for attentional information routing through coherence predicts biased competition and multistable perception. Description: Harnack, Daniel, et al. A model for attentional information routing through coherence predicts biased competition and multistable perception. ''J Neurophysiol''. 2015 Sep; '''114''' (3):1593-605
A circuit motif in the zebrafish hindbrain for a two alternative behavioral choice to turn left or right. Description: Koyama, Minoru, et al. A circuit motif in the zebrafish hindbrain for a two alternative behavioral choice to turn left or right. ''Elife''. 2016 Aug 9; '''5''':
In Vivo Imaging of Dentate Gyrus Mossy Cells in Behaving Mice. Description: Danielson, Nathan B, et al. In Vivo Imaging of Dentate Gyrus Mossy Cells in Behaving Mice. ''Neuron''. 2017 Feb 8; '''93''' (3):552-559.e4
Beyond excitation/inhibition imbalance in multidimensional models of neural circuit changes in brain disorders. Description: O'Donnell, Cian, et al. Beyond excitation/inhibition imbalance in multidimensional models of neural circuit changes in brain disorders. ''Elife''. 2017 Oct 11; '''6''':
Interneurons in the Honeybee Primary Auditory Center Responding to Waggle Dance-Like Vibration Pulses. Description: Ai, Hiroyuki, et al. Interneurons in the Honeybee Primary Auditory Center Responding to Waggle Dance-Like Vibration Pulses. ''J Neurosci''. 2017 Nov 1; '''37''' (44):10624-10635
Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data. Description: Gutzen, Robin, et al. Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data. ''Front Neuroinform''. 2018; '''12''': 90
Neuroscience: Modeling the Brain on Acid. Description: van der Meer, Johan, et al. Neuroscience: Modeling the Brain on Acid. ''Curr Biol''. 2018 Oct 8; '''28''' (19):R1157-R1160
The Spectrum of Asynchronous Dynamics in Spiking Networks as a Model for the Diversity of Non-rhythmic Waking States in the Neocortex. Description: Zerlaut, Yann, et al. The Spectrum of Asynchronous Dynamics in Spiking Networks as a Model for the Diversity of Non-rhythmic Waking States in the Neocortex. ''Cell Rep''. 2019 Apr 23; '''27''' (4):1119-1132.e7
Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits. Description: Gleeson, Padraig, et al. Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits. ''Neuron''. 2019 Aug 7; '''103''' (3):395-411.e5
Brian 2, an intuitive and efficient neural simulator. Description: Stimberg, Marcel, et al. Brian 2, an intuitive and efficient neural simulator. ''Elife''. 2019 Aug 20; '''8''':
Pre-stimulus phase and amplitude regulation of phase-locked responses are maximized in the critical state. Description: Avramiea, Arthur-Ervin, et al. Pre-stimulus phase and amplitude regulation of phase-locked responses are maximized in the critical state. ''Elife''. 2020 Apr 27; '''9''':
Empirically constrained network models for contrast-dependent modulation of gamma rhythm in V1. Description: Zachariou, Margarita, et al. Empirically constrained network models for contrast-dependent modulation of gamma rhythm in V1. ''Neuroimage''. 2021 Apr 1; '''229''': 117748
Activity-dependent modulation of NMDA receptors by endogenous zinc shapes dendritic function in cortical neurons. Description: Morabito, Annunziato, et al. Activity-dependent modulation of NMDA receptors by endogenous zinc shapes dendritic function in cortical neurons. ''Cell Rep''. 2022 Feb 22; '''38''' (8):110415
Neural readout of a latency code in the active electrosensory system. Description: Perks, Krista E, et al. Neural readout of a latency code in the active electrosensory system. ''Cell Rep''. 2022 Mar 29; '''38''' (13):110605
Paradoxical self-sustained dynamics emerge from orchestrated excitatory and inhibitory homeostatic plasticity rules. Description: Soldado-Magraner, Saray, et al. Paradoxical self-sustained dynamics emerge from orchestrated excitatory and inhibitory homeostatic plasticity rules. ''Proc Natl Acad Sci U S A''. 2022 Oct 25; '''119''' (43):e2200621119
Bridging model and experiment in systems neuroscience with Cleo: the Closed-Loop, Electrophysiology, and Optophysiology simulation testbed. Description: Johnsen, Kyle A, et al. Bridging model and experiment in systems neuroscience with Cleo: the Closed-Loop, Electrophysiology, and Optophysiology simulation testbed. ''bioRxiv''. 2024 Jul 9;