PubMed Mentions

The links below are to publications on PubMed referring to The Virtual Brain (TVB). This list is gathered weekly from PubMed automatically.

Publication/References
Hundreds of brain maps in one atlas: registering coordinate-independent primate neuro-anatomical data to a standard brain. Description: Bezgin, Gleb, et al. Hundreds of brain maps in one atlas: registering coordinate-independent primate neuro-anatomical data to a standard brain. ''Neuroimage''. 2012 Aug 1; '''62''' (1):67-76
Cross-frequency coupling in real and virtual brain networks. Description: Jirsa, Viktor, et al. Cross-frequency coupling in real and virtual brain networks. ''Front Comput Neurosci''. 2013; '''7''': 78
Intra- and inter-brain synchronization during musical improvisation on the guitar. Description: Muller, Viktor, et al. Intra- and inter-brain synchronization during musical improvisation on the guitar. ''PLoS One''. 2013; '''8''' (9):e73852
The Virtual Brain: a simulator of primate brain network dynamics. Description: Sanz Leon, Paula, et al. The Virtual Brain: a simulator of primate brain network dynamics. ''Front Neuroinform''. 2013; '''7''': 10
Spatiotemporal multi-resolution approximation of the Amari type neural field model. Description: Aram, P, et al. Spatiotemporal multi-resolution approximation of the Amari type neural field model. ''Neuroimage''. 2013 Feb 1; '''66''': 88-102
Mapping the dynamic repertoire of the resting brain. Description: Hadriche, Abir, et al. Mapping the dynamic repertoire of the resting brain. ''Neuroimage''. 2013 Sep; '''78''': 448-62
The history of CoCoMac. Description: Stephan, Klaas Enno. The history of CoCoMac. ''Neuroimage''. 2013 Oct 15; '''80''': 46-52
Integrating neuroinformatics tools in TheVirtualBrain. Description: Woodman, M Marmaduke, et al. Integrating neuroinformatics tools in TheVirtualBrain. ''Front Neuroinform''. 2014; '''8''': 36
Estimation of direct nonlinear effective connectivity using information theory and multilayer perceptron. Description: Khadem, Ali, et al. Estimation of direct nonlinear effective connectivity using information theory and multilayer perceptron. ''J Neurosci Methods''. 2014 May 30; '''229''': 53-67
Great expectations: using whole-brain computational connectomics for understanding neuropsychiatric disorders. Description: Deco, Gustavo, et al. Great expectations: using whole-brain computational connectomics for understanding neuropsychiatric disorders. ''Neuron''. 2014 Dec 3; '''84''' (5):892-905
TVB-EduPack-An Interactive Learning and Scripting Platform for The Virtual Brain. Description: Matzke, Henrik, et al. TVB-EduPack-An Interactive Learning and Scripting Platform for The Virtual Brain. ''Front Neuroinform''. 2015; '''9''': 27
Role of white-matter pathways in coordinating alpha oscillations in resting visual cortex. Description: Hindriks, R, et al. Role of white-matter pathways in coordinating alpha oscillations in resting visual cortex. ''Neuroimage''. 2015 Feb 1; '''106''': 328-39
Translational Perspectives for Computational Neuroimaging. Description: Stephan, Klaas E, et al. Translational Perspectives for Computational Neuroimaging. ''Neuron''. 2015 Aug 19; '''87''' (4):716-32
Building the Ferretome. Description: Sukhinin, Dmitrii I, et al. Building the Ferretome. ''Front Neuroinform''. 2016; '''10''': 16
Structure and Topology Dynamics of Hyper-Frequency Networks during Rest and Auditory Oddball Performance. Description: Muller, Viktor, et al. Structure and Topology Dynamics of Hyper-Frequency Networks during Rest and Auditory Oddball Performance. ''Front Comput Neurosci''. 2016; '''10''': 108
Selective Activation of Resting-State Networks following Focal Stimulation in a Connectome-Based Network Model of the Human Brain. Description: Spiegler, Andreas, et al. Selective Activation of Resting-State Networks following Focal Stimulation in a Connectome-Based Network Model of the Human Brain. ''eNeuro''. 2016 Sep-Oct; '''3''' (5):
Transcranial direct current stimulation changes resting state functional connectivity: A large-scale brain network modeling study. Description: Kunze, Tim, et al. Transcranial direct current stimulation changes resting state functional connectivity: A large-scale brain network modeling study. ''Neuroimage''. 2016 Oct 15; '''140''': 174-87
The Virtual Epileptic Patient: Individualized whole-brain models of epilepsy spread. Description: Jirsa, V K, et al. The Virtual Epileptic Patient: Individualized whole-brain models of epilepsy spread. ''Neuroimage''. 2017 Jan 15; '''145''' (Pt B):377-388
Differentiation of Alzheimer's disease based on local and global parameters in personalized Virtual Brain models. Description: Zimmermann, J, et al. Differentiation of Alzheimer's disease based on local and global parameters in personalized Virtual Brain models. ''Neuroimage Clin''. 2018; '''19''': 240-251
Annual Research Review: Not just a small adult brain: understanding later neurodevelopment through imaging the neonatal brain. Description: Batalle, Dafnis, et al. Annual Research Review: Not just a small adult brain: understanding later neurodevelopment through imaging the neonatal brain. ''J Child Psychol Psychiatry''. 2018 Apr; '''59''' (4):350-371
Linking Molecular Pathways and Large-Scale Computational Modeling to Assess Candidate Disease Mechanisms and Pharmacodynamics in Alzheimer's Disease. Description: Stefanovski, Leon, et al. Linking Molecular Pathways and Large-Scale Computational Modeling to Assess Candidate Disease Mechanisms and Pharmacodynamics in Alzheimer's Disease. ''Front Comput Neurosci''. 2019; '''13''': 54
Transmission time delays organize the brain network synchronization. Description: Petkoski, Spase, et al. Transmission time delays organize the brain network synchronization. ''Philos Trans A Math Phys Eng Sci''. 2019 Sep 9; '''377''' (2153):20180132
A Connectome-Based, Corticothalamic Model of State- and Stimulation-Dependent Modulation of Rhythmic Neural Activity and Connectivity. Description: Griffiths, John D, et al. A Connectome-Based, Corticothalamic Model of State- and Stimulation-Dependent Modulation of Rhythmic Neural Activity and Connectivity. ''Front Comput Neurosci''. 2020; '''14''': 575143
In silico exploration of mouse brain dynamics by focal stimulation reflects the organization of functional networks and sensory processing. Description: Spiegler, Andreas, et al. In silico exploration of mouse brain dynamics by focal stimulation reflects the organization of functional networks and sensory processing. ''Netw Neurosci''. 2020; '''4''' (3):807-851
Modeling the influence of the hippocampal memory system on the oculomotor system. Description: Ryan, Jennifer D, et al. Modeling the influence of the hippocampal memory system on the oculomotor system. ''Netw Neurosci''. 2020; '''4''' (1):217-233
Dynamical Mechanisms of Interictal Resting-State Functional Connectivity in Epilepsy. Description: Courtiol, Julie, et al. Dynamical Mechanisms of Interictal Resting-State Functional Connectivity in Epilepsy. ''J Neurosci''. 2020 Jul 15; '''40''' (29):5572-5588
Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual Brain. Description: Stefanovski, Leon, et al. Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual Brain. ''Front Neuroinform''. 2021; '''15''': 630172
Investigating the network consequences of focal brain lesions through comparisons of real and simulated lesions. Description: Tao, Yuan, et al. Investigating the network consequences of focal brain lesions through comparisons of real and simulated lesions. ''Sci Rep''. 2021 Jan 26; '''11''' (1):2213
On the influence of prior information evaluated by fully Bayesian criteria in a personalized whole-brain model of epilepsy spread. Description: Hashemi, Meysam, et al. On the influence of prior information evaluated by fully Bayesian criteria in a personalized whole-brain model of epilepsy spread. ''PLoS Comput Biol''. 2021 Jul; '''17''' (7):e1009129
Rare long-range cortical connections enhance human information processing. Description: Deco, Gustavo, et al. Rare long-range cortical connections enhance human information processing. ''Curr Biol''. 2021 Oct 25; '''31''' (20):4436-4448.e5
A Roadmap for Computational Modelling of M/EEG. Description: Franceschiello, Benedetta, et al. A Roadmap for Computational Modelling of M/EEG. ''Brain Topogr''. 2022 Jan; '''35''' (1):1-3
Altered synaptic plasticity at hippocampal CA1-CA3 synapses in Alzheimer's disease: integration of amyloid precursor protein intracellular domain and amyloid beta effects into computational models. Description: Dainauskas, Justinas J, et al. Altered synaptic plasticity at hippocampal CA1-CA3 synapses in Alzheimer's disease: integration of amyloid precursor protein intracellular domain and amyloid beta effects into computational models. ''Front Comput Neurosci''. 2023; '''17''': 1305169
Human Brain Project Partnering Projects Meeting: Status Quo and Outlook. Description: Lorents, Angeliki, et al. Human Brain Project Partnering Projects Meeting: Status Quo and Outlook. ''eNeuro''. 2023 Sep; '''10''' (9):
Hyper-brain hyper-frequency network topology dynamics when playing guitar in quartet. Description: Muller, Viktor, et al. Hyper-brain hyper-frequency network topology dynamics when playing guitar in quartet. ''Front Hum Neurosci''. 2024; '''18''': 1416667
Connectome-based reservoir computing with the conn2res toolbox. Description: Suarez, Laura E, et al. Connectome-based reservoir computing with the conn2res toolbox. ''Nat Commun''. 2024 Jan 22; '''15''' (1):656