PubMed Mentions

The links below are to publications on PubMed referring to Hippocampome.org. This list is gathered weekly from PubMed automatically.

Publication/References
Quantitative assessment of CA1 local circuits: knowledge base for interneuron-pyramidal cell connectivity. Description: Bezaire, Marianne J, et al. Quantitative assessment of CA1 local circuits: knowledge base for interneuron-pyramidal cell connectivity. ''Hippocampus''. 2013 Sep; '''23''' (9):751-85
Parametric Anatomical Modeling: a method for modeling the anatomical layout of neurons and their projections. Description: Pyka, Martin, et al. Parametric Anatomical Modeling: a method for modeling the anatomical layout of neurons and their projections. ''Front Neuroanat''. 2014; '''8''': 91
A computational model of pattern separation efficiency in the dentate gyrus with implications in schizophrenia. Description: Faghihi, Faramarz, et al. A computational model of pattern separation efficiency in the dentate gyrus with implications in schizophrenia. ''Front Syst Neurosci''. 2015; '''9''': 42
Distinct and synergistic feedforward inhibition of pyramidal cells by basket and bistratified interneurons. Description: Ferrante, Michele, et al. Distinct and synergistic feedforward inhibition of pyramidal cells by basket and bistratified interneurons. ''Front Cell Neurosci''. 2015; '''9''': 439
Hippocampome.org: a knowledge base of neuron types in the rodent hippocampus. Description: Wheeler, Diek W, et al. Hippocampome.org: a knowledge base of neuron types in the rodent hippocampus. ''Elife''. 2015 Sep 24; '''4''':
The Effects of Realistic Synaptic Distribution and 3D Geometry on Signal Integration and Extracellular Field Generation of Hippocampal Pyramidal Cells and Inhibitory Neurons. Description: Gulyas, Attila I, et al. The Effects of Realistic Synaptic Distribution and 3D Geometry on Signal Integration and Extracellular Field Generation of Hippocampal Pyramidal Cells and Inhibitory Neurons. ''Front Neural Circuits''. 2016; '''10''': 88
Graph Theoretic and Motif Analyses of the Hippocampal Neuron Type Potential Connectome. Description: Rees, Christopher L, et al. Graph Theoretic and Motif Analyses of the Hippocampal Neuron Type Potential Connectome. ''eNeuro''. 2016 Nov-Dec; '''3''' (6):
Anatomical and molecular characterization of dopamine D1 receptor-expressing neurons of the mouse CA1 dorsal hippocampus. Description: Puighermanal, Emma, et al. Anatomical and molecular characterization of dopamine D1 receptor-expressing neurons of the mouse CA1 dorsal hippocampus. ''Brain Struct Funct''. 2017 May; '''222''' (4):1897-1911
Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types. Description: Venkadesh, Siva, et al. Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types. ''Front Neuroinform''. 2018; '''12''': 8
Neuron Names: A Gene- and Property-Based Name Format, With Special Reference to Cortical Neurons. Description: Shepherd, Gordon M, et al. Neuron Names: A Gene- and Property-Based Name Format, With Special Reference to Cortical Neurons. ''Front Neuroanat''. 2019; '''13''': 25
Simple models of quantitative firing phenotypes in hippocampal neurons: Comprehensive coverage of intrinsic diversity. Description: Venkadesh, Siva, et al. Simple models of quantitative firing phenotypes in hippocampal neurons: Comprehensive coverage of intrinsic diversity. ''PLoS Comput Biol''. 2019 Oct; '''15''' (10):e1007462
Quantitative firing pattern phenotyping of hippocampal neuron types. Description: Komendantov, Alexander O, et al. Quantitative firing pattern phenotyping of hippocampal neuron types. ''Sci Rep''. 2019 Nov 29; '''9''' (1):17915
Molecular expression profiles of morphologically defined hippocampal neuron types: Empirical evidence and relational inferences. Description: White, Charise M, et al. Molecular expression profiles of morphologically defined hippocampal neuron types: Empirical evidence and relational inferences. ''Hippocampus''. 2020 May; '''30''' (5):472-487
Database of literature derived cellular measurements from the murine basal ganglia. Description: Bjerke, Ingvild E, et al. Database of literature derived cellular measurements from the murine basal ganglia. ''Sci Data''. 2020 Jul 6; '''7''' (1):211
Data-driven integration of hippocampal CA1 synaptic physiology in silico. Description: Ecker, Andras, et al. Data-driven integration of hippocampal CA1 synaptic physiology in silico. ''Hippocampus''. 2020 Nov; '''30''' (11):1129-1145
HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data. Description: Saray, Sara, et al. HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data. ''PLoS Comput Biol''. 2021 Jan; '''17''' (1):e1008114
Neuronal classification from network connectivity via adjacency spectral embedding. Description: Mehta, Ketan, et al. Neuronal classification from network connectivity via adjacency spectral embedding. ''Netw Neurosci''. 2021; '''5''' (3):689-710
Open Frontiers in Neural Cell Type Investigations; Lessons From Caenorhabditis elegans and Beyond, Toward a Multimodal Integration. Description: Rapti, Georgia. Open Frontiers in Neural Cell Type Investigations; Lessons From Caenorhabditis elegans and Beyond, Toward a Multimodal Integration. ''Front Neurosci''. 2021; '''15''': 787753
An update to Hippocampome.org by integrating single-cell phenotypes with circuit function in vivo. Description: Sanchez-Aguilera, Alberto, et al. An update to Hippocampome.org by integrating single-cell phenotypes with circuit function in vivo. ''PLoS Biol''. 2021 May; '''19''' (5):e3001213
Normalized unitary synaptic signaling of the hippocampus and entorhinal cortex predicted by deep learning of experimental recordings. Description: Moradi, Keivan, et al. Normalized unitary synaptic signaling of the hippocampus and entorhinal cortex predicted by deep learning of experimental recordings. ''Commun Biol''. 2022 May 5; '''5''' (1):418
The Neuron Phenotype Ontology: A FAIR Approach to Proposing and Classifying Neuronal Types. Description: Gillespie, Thomas H, et al. The Neuron Phenotype Ontology: A FAIR Approach to Proposing and Classifying Neuronal Types. ''Neuroinformatics''. 2022 Jul; '''20''' (3):793-809
Full-scale scaffold model of the human hippocampus CA1 area. Description: Gandolfi, Daniela, et al. Full-scale scaffold model of the human hippocampus CA1 area. ''Nat Comput Sci''. 2023 Mar; '''3''' (3):264-276
A guide to the BRAIN Initiative Cell Census Network data ecosystem. Description: Hawrylycz, Michael, et al. A guide to the BRAIN Initiative Cell Census Network data ecosystem. ''PLoS Biol''. 2023 Jun; '''21''' (6):e3002133
Hippocampome.org v2.0: a knowledge base enabling data-driven spiking neural network simulations of rodent hippocampal circuits. Description: Wheeler, Diek W, et al. Hippocampome.org v2.0: a knowledge base enabling data-driven spiking neural network simulations of rodent hippocampal circuits. ''bioRxiv''. 2024 Jan 8;
Hippocampome.org 2.0 is a knowledge base enabling data-driven spiking neural network simulations of rodent hippocampal circuits. Description: Wheeler, Diek W, et al. Hippocampome.org 2.0 is a knowledge base enabling data-driven spiking neural network simulations of rodent hippocampal circuits. ''Elife''. 2024 Feb 12; '''12''':
Formation and Retrieval of Cell Assemblies in a Biologically Realistic Spiking Neural Network Model of Area CA3 in the Mouse Hippocampus. Description: Kopsick, Jeffrey D, et al. Formation and Retrieval of Cell Assemblies in a Biologically Realistic Spiking Neural Network Model of Area CA3 in the Mouse Hippocampus. ''bioRxiv''. 2024 Mar 29;
A Continuous Attractor Model with Realistic Neural and Synaptic Properties Quantitatively Reproduces Grid Cell Physiology. Description: Sutton, Nate, et al. A Continuous Attractor Model with Realistic Neural and Synaptic Properties Quantitatively Reproduces Grid Cell Physiology. ''bioRxiv''. 2024 May 1;
Formation and retrieval of cell assemblies in a biologically realistic spiking neural network model of area CA3 in the mouse hippocampus. Description: Kopsick, Jeffrey D, et al. Formation and retrieval of cell assemblies in a biologically realistic spiking neural network model of area CA3 in the mouse hippocampus. ''J Comput Neurosci''. 2024 Nov; '''52''' (4):303-321