Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
992495
2
MRIcron
978389
3
BIDScoin
711081
4
ITK-SNAP
468037
5
FCP/INDI PRIVATE SITE
384619
6
IIT Human Brain Atlas (v.5.0)
224808
7
fMRI-CPCA
207047
8
MRIcroGL
205620
9
CONN : functional connectivity toolbox
204861
10
1000 Functional Connectomes Project
183939
11
BrainNet Viewer
120536
12
DTI-TK
97081
13
BXH/XCEDE Tools
89781
14
NIDB - Neuroinformatics Database
86849
15
IBSR
82048
16
BioImage Suite
80873
17
age-ility
80462
18
Multi-Modal MRI Reproducibility Resource
76366
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
72733
20
Solar Eclipse Imaging Genetics tools
68464
21
WFU_PickAtlas
66643
22
JIST: Java Image Science Toolkit
66050
23
BrainFlow
62486
24
GIFTI
54334
25
PANDA: a pipeline tool for diffusion MRI
53248
26
NITRC Computational Environment (NITRC-CE)
51280
27
The Neuro Bureau
51262
28
3T DWI test-retest reliability dataset
47288
29
Functional Imaging BIRN
47079
30
TOADS-CRUISE Brain Segmentation Tools
42138
31
fNIRS Data Analysis Environment
41772
32
Multimodal Visual Consciousness Study Dataset
40201
33
EEGLAB
40069
34
Generalized PPI Toolbox
39234
35
FreeSurfer
37987
36
QuickNII - Serial section aligner to volumetric atlases
36802
37
BrainMap Database
36483
38
Network-Based Statistic (NBS)
34860
39
MIITRA atlas
33973
40
NeuroImaging Analysis Kit (NIAK)
32750
41
UNC 0-1-2 Infant Atlases
31720
42
Brain Biomechanics Imaging Resources
30559
43
Homer2
29545
44
DWI/DTI Quality Control Tool: DTIPrep
27312
45
NeuroDebian
27280
46
TumorSim
27114
47
Anima
26832
48
NYU CSC TestRetest
26618
49
BrainVisa Morphologist extensions
26609
50
Graph Theory GLM (GTG) MATLAB Toolbox
25816
51
XNAT Extras
24782
52
Melbourne Subcortex Atlas
23616
53
CBS High-Res Brain Processing Tools
23530
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
23314
55
4D UNC Neonatal and Infant Cortical Surface Atlases
22757
56
Neuroimaging Made Easy Blog
22443
57
SPHARM-PDM Toolbox
21983
58
SRI24 Atlas: Normal Adult Brain Anatomy
20258
59
BrainMask Volume Processing Tool
19511
60
Mango
19386
61
Data Format Tools
19358
62
Fast Nonlocal Means for MRI denoising
19154
63
Vaa3D and Vaa3D-Neuron
19146
64
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
18917
65
Surf Ice
18824
66
CANDI Neuroimaging Access Point
18797
67
Automatic Registration Toolbox
18597
68
MITK Diffusion
18328
69
Group ICA Toolbox (GIFT and EEGIFT)
17862
70
GRETNA
17600
71
3DSlicerLupusLesionModule
17333
72
Talairach Daemon
17064
73
Subject Order-Independent Group ICA
16849
74
Awake Rat rsfMRI Database
16749
75
Diffusion Toolkit / TrackVis
16631
76
DCP：Diffusion Connectome Pipeline
16578
77
Spatially Constrained Parcellation
16385
78
MRtrix
16268
79
3D Slicer
16236
80
Freesurfer fsaverage
16198
81
Computational Morphometry Toolkit (CMTK)
16158
82
ShapePopulationViewer
16079
83
BrainSuite
15960
84
Hammer And WML Modules for 3D Slicer
15819
85
Human Imaging Database (HID)
15805
86
ENIGMA-DTI pipeline
15296
87
AutoSeg
15055
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14485
89
MARS (Multi-Atlas Robust Segmentation)
14479
90
FSL
14210
91
Brainstorm
13843
92
Artifact Detection Tools (ART)
13529
93
dcm2nii
13240
94
ANDA
13188
95
libminc - Medical Image NetCDF library
12878
96
Nighres
12819
97
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
12732
98
ABSORB for groupwise registration
12556
99
Maps4Mipav (Exploratory JIST)
12509
100
NeuroDOT
12431