Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
858393
2
Nilearn
485877
3
ITK-SNAP
408879
4
FCP/INDI PRIVATE SITE
277059
5
1000 Functional Connectomes Project
171153
6
IIT Human Brain Atlas (v.5.0)
149412
7
MRIcroGL
147016
8
CONN : functional connectivity toolbox
145937
9
DTI-TK
88002
10
BrainNet Viewer
83304
11
IBSR
70607
12
Multi-Modal MRI Reproducibility Resource
59199
13
WFU_PickAtlas
58863
14
BioImage Suite
52521
15
age-ility
48306
16
BXH/XCEDE Tools
44090
17
PANDA: a pipeline tool for diffusion MRI
40870
18
EEGLAB
39652
19
Solar Eclipse Imaging Genetics tools
39263
20
The Neuro Bureau
38229
21
JIST: Java Image Science Toolkit
38079
22
FreeSurfer
37842
23
Waxholm Space Atlas of the Sprague Dawley Rat Brain
37591
24
TOADS-CRUISE Brain Segmentation Tools
36051
25
GIFTI
34995
26
fNIRS Data Analysis Environment
32780
27
Functional Imaging BIRN
32507
28
Generalized PPI Toolbox
30508
29
NITRC Computational Environment (NITRC-CE)
28572
30
3T DWI test-retest reliability dataset
28076
31
BrainMap Database
24986
32
BIDScoin
24515
33
NIDB - Neuroinformatics Database
23975
34
Homer2
22922
35
NeuroDebian
21391
36
Network-Based Statistic (NBS)
20882
37
fMRI-CPCA
20679
38
Anima
20637
39
BrainVisa Morphologist extensions
20375
40
NYU CSC TestRetest
19775
41
UNC 0-1-2 Infant Atlases
18216
42
Mango
17366
43
MITK Diffusion
17083
44
XNAT Extras
17068
45
Neuroimaging Made Easy Blog
16081
46
Automatic Registration Toolbox
15360
47
GRETNA
15085
48
Data Format Tools
14476
49
3D Slicer
14469
50
Surf Ice
14256
51
Freesurfer fsaverage
13887
52
Talairach Daemon
13845
53
Spatially Constrained Parcellation
13760
54
QuickNII - Serial section aligner to volumetric atlases
13753
55
Diffusion Toolkit / TrackVis
13681
56
Brain Biomechanics Imaging Resources
13518
57
Brainstorm
13490
58
Vaa3D and Vaa3D-Neuron
13428
59
SRI24 Atlas: Normal Adult Brain Anatomy
12734
60
DCP：Diffusion Connectome Pipeline
12605
61
dcm2nii
12541
62
libminc - Medical Image NetCDF library
12511
63
CBS High-Res Brain Processing Tools
12502
64
Melbourne Subcortex Atlas
12341
65
Group ICA Toolbox (GIFT and EEGIFT)
12309
66
MRtrix
12273
67
BrainMask Volume Processing Tool
11820
68
Computational Morphometry Toolkit (CMTK)
11597
69
FSL
11420
70
3DSlicerLupusLesionModule
11374
71
Artifact Detection Tools (ART)
11370
72
DWI/DTI Quality Control Tool: DTIPrep
11111
73
CANDI Neuroimaging Access Point
11032
74
Subject Order-Independent Group ICA
10925
75
BrainSuite
10866
76
Human Imaging Database (HID)
10817
77
TumorSim
10817
78
2008 MICCAI MS Lesion Segmentation Challenge
10785
79
BrainVISA
10774
80
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10440
81
Hammer And WML Modules for 3D Slicer
10396
82
NeuroImaging Analysis Kit (NIAK)
10230
83
NODDI Matlab Toolbox
9701
84
SPM for fNIRS toolbox
9671
85
Source Information Flow Toolbox
9641
86
Diffusional Kurtosis Estimator
9514
87
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
9320
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9306
89
4D UNC Neonatal and Infant Cortical Surface Atlases
9275
90
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9146
91
NIfTI
9031
92
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
8899
93
ENIGMA-DTI pipeline
8782
94
Task Independent Fluctuations Discussion
8585
95
SPHARM-PDM Toolbox
8523
96
MARS (Multi-Atlas Robust Segmentation)
8293
97
Robust Brain Extraction (ROBEX)
8183
98
Awake Rat rsfMRI Database
8129
99
iBEAT
7956
100
Center for Functional Neuroimaging Tech
7707