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help > RE: No .nii output files
Aug 14, 2015 02:08 AM | Kelli Cannon - UAB
RE: No .nii output files
That worked! Thank-you for your timely
and thorough reply!!
Originally posted by Alfonso Nieto-Castanon:
Originally posted by Alfonso Nieto-Castanon:
Hi
Kelli,
The desired output files specified by the batch.Setup.outputfiles variable in your script (create confound corrected functionals, create seed-to-voxel r-maps, etc.) are only computed if your planned analyses include 'seed-to-voxel' analyses. The batch.Setup.analyses variable in your script is set to [1] (which specifies that you only want to run ROI-to-ROI analyses) so none of the voxel-level data is processed and none of those optional files are generated. To fix this simply change the batch.Setup.analyses variable to [1,2] (to include both ROI-to-ROI and seed-to-voxel analyses).
Hope this helps
Alfonso
Originally posted by Kelli Cannon:
The desired output files specified by the batch.Setup.outputfiles variable in your script (create confound corrected functionals, create seed-to-voxel r-maps, etc.) are only computed if your planned analyses include 'seed-to-voxel' analyses. The batch.Setup.analyses variable in your script is set to [1] (which specifies that you only want to run ROI-to-ROI analyses) so none of the voxel-level data is processed and none of those optional files are generated. To fix this simply change the batch.Setup.analyses variable to [1,2] (to include both ROI-to-ROI and seed-to-voxel analyses).
Hope this helps
Alfonso
Originally posted by Kelli Cannon:
Hi,
I have written and run a script that implements the conn_batch function. Although I did not receive any error messages, the job finished without producing any of the nifti output files that I specified in the batch.Setup.outputfiles parameter. I would greatly appreciate some help in figuring out why the files were not created. I have attached a copy of my script for your reference.
Best regards,
Kelli
I have written and run a script that implements the conn_batch function. Although I did not receive any error messages, the job finished without producing any of the nifti output files that I specified in the batch.Setup.outputfiles parameter. I would greatly appreciate some help in figuring out why the files were not created. I have attached a copy of my script for your reference.
Best regards,
Kelli
Threaded View
| Title | Author | Date |
|---|---|---|
| Kelli Cannon | Aug 13, 2015 | |
| Alfonso Nieto-Castanon | Aug 14, 2015 | |
| Kelli Cannon | Aug 14, 2015 | |