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help > RE: Seed-to-voxel error, Results explorer
Aug 19, 2015 01:08 PM | Alfonso Nieto-Castanon - Boston University
RE: Seed-to-voxel error, Results explorer
Hi Annie,
That looks like some other software package is perhaps interfering with the normal operation of SPM/CONN. Could you please do the following:
1) cd to a neutral folder (one that does not contain any .m file). If in doubt type "mkdir temp; cd temp" (without the quotes) to cd to a newly created empty folder
2) run the command "conn_checkdistributionfiles" (without the quotes) and see whether you get any warning message regarding possible overloaded functions
3) check your Matlab path and make sure that the SPM folder (SPM8) is listed on top of any other toolboxes that you may have installed
4) repeat steps (2) and (3) until you see no warnings in (2)
5) restart CONN
Let me know if that helps
Best
Alfonso
Originally posted by Annie Möller:
That looks like some other software package is perhaps interfering with the normal operation of SPM/CONN. Could you please do the following:
1) cd to a neutral folder (one that does not contain any .m file). If in doubt type "mkdir temp; cd temp" (without the quotes) to cd to a newly created empty folder
2) run the command "conn_checkdistributionfiles" (without the quotes) and see whether you get any warning message regarding possible overloaded functions
3) check your Matlab path and make sure that the SPM folder (SPM8) is listed on top of any other toolboxes that you may have installed
4) repeat steps (2) and (3) until you see no warnings in (2)
5) restart CONN
Let me know if that helps
Best
Alfonso
Originally posted by Annie Möller:
Hi again!
I have been trying some more today and it seems that it might be the graphic interface that is not working. I reran the first-level-analyses, saving them as two separate analyses. One with ROI-to-ROI and Seed-to-Voxel and one with Voxel-to-Voxel. When I am in the second-level Results, the difference now is that I can see the results in the brain-map to the right, from both ROI, Seed and Voxel-analyses, but only run the results explorer for ROI-to-ROI. trying to run it for Seed-to-Voxel or Voxel.to-Voxel creates an Error-report, like before, and the whole conn-toolbox is jammed.
I would also like to add a copy of the first part of the ERROR-lines in Matlab:
Loading project file. Please wait... Done
ROI results saved in /data/annimo/Conn_25new_try/Conn_for_all_25_groupwise/results/secondlevel/R_R_and_S_V/AllSubjects/T2/ROI.mat
??? Reference to non-existent field 'handle'.
Error in ==> conn_menumanager at 201
for n1=1:length(MM.MENU{thishandle}.handle.axes),
Error in ==> conn_menumanager at 115
if CONN_MM.ACTIVE(n0),
conn_menumanager(n0,'off',1,'on',1); end
??? Error while evaluating uicontrol Callback
??? Reference to non-existent field 'gcf'.
Error in ==> conn_menumanager at 60
if gcf~=MM.gcf, return; end
??? Error while evaluating figure WindowButtonMotionFcn
After that, the part from "??? Reference to non-existent field 'gcf'." and down is repeated at least 100 times.
It seems the problems starts with *handle*.
Maybe this information is more helpful
/Annie
I have been trying some more today and it seems that it might be the graphic interface that is not working. I reran the first-level-analyses, saving them as two separate analyses. One with ROI-to-ROI and Seed-to-Voxel and one with Voxel-to-Voxel. When I am in the second-level Results, the difference now is that I can see the results in the brain-map to the right, from both ROI, Seed and Voxel-analyses, but only run the results explorer for ROI-to-ROI. trying to run it for Seed-to-Voxel or Voxel.to-Voxel creates an Error-report, like before, and the whole conn-toolbox is jammed.
I would also like to add a copy of the first part of the ERROR-lines in Matlab:
Loading project file. Please wait... Done
ROI results saved in /data/annimo/Conn_25new_try/Conn_for_all_25_groupwise/results/secondlevel/R_R_and_S_V/AllSubjects/T2/ROI.mat
??? Reference to non-existent field 'handle'.
Error in ==> conn_menumanager at 201
for n1=1:length(MM.MENU{thishandle}.handle.axes),
Error in ==> conn_menumanager at 115
if CONN_MM.ACTIVE(n0),
conn_menumanager(n0,'off',1,'on',1); end
??? Error while evaluating uicontrol Callback
??? Reference to non-existent field 'gcf'.
Error in ==> conn_menumanager at 60
if gcf~=MM.gcf, return; end
??? Error while evaluating figure WindowButtonMotionFcn
After that, the part from "??? Reference to non-existent field 'gcf'." and down is repeated at least 100 times.
It seems the problems starts with *handle*.
Maybe this information is more helpful
/Annie
Threaded View
Title | Author | Date |
---|---|---|
Annie Möller | Aug 18, 2015 | |
Alfonso Nieto-Castanon | Aug 18, 2015 | |
Annie Möller | Aug 18, 2015 | |
Annie Möller | Aug 19, 2015 | |
Alfonso Nieto-Castanon | Aug 19, 2015 | |
Annie Möller | Aug 20, 2015 | |
Alfonso Nieto-Castanon | Aug 18, 2015 | |