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help > keeping output from multiple denoising streams
Feb 22, 2018 09:02 PM | Keith Jamison
keeping output from multiple denoising streams
I want to compare a few different denoising schemes, and I'm
unclear how to do that without overwriting the outputs each time.
For example, I would like to generate:
1. voxel time series and ROI time series WITHOUT temporal low-pass filter
2. voxel time series and ROI time series WITH temporal low-pass filter
If I set up my batch for #1 (batch.Denoising.filter = [ .008 inf]), and run it (conn_batch(batch)), I get CONNDIR/data/ with the preprocessed data, and CONNDIR/results/preprocessing/DATA* and ROI*, which contain the denoised data I want
But then if I modify my batch for #2 (batch2=batch; batch2.Denoising.filter = [.008 .09]) and run it (conn_batch(batch2)), it simply overwrites CONNDIR/results/preprocessing/*
I know I could specify a new before running #2, but then it regenerates the entire CONNDIR/data which is unnecessary and wastes a lot of time and disk space, as well as leaving potential room for mismatch between the preprocessed inputs to denoising.
Is there a way to use the same preprocessed data, but specify an alternate location for the denoised outputs, so that I can have both sets side by side?
1. voxel time series and ROI time series WITHOUT temporal low-pass filter
2. voxel time series and ROI time series WITH temporal low-pass filter
If I set up my batch for #1 (batch.Denoising.filter = [ .008 inf]), and run it (conn_batch(batch)), I get CONNDIR/data/ with the preprocessed data, and CONNDIR/results/preprocessing/DATA* and ROI*, which contain the denoised data I want
But then if I modify my batch for #2 (batch2=batch; batch2.Denoising.filter = [.008 .09]) and run it (conn_batch(batch2)), it simply overwrites CONNDIR/results/preprocessing/*
I know I could specify a new before running #2, but then it regenerates the entire CONNDIR/data which is unnecessary and wastes a lot of time and disk space, as well as leaving potential room for mismatch between the preprocessed inputs to denoising.
Is there a way to use the same preprocessed data, but specify an alternate location for the denoised outputs, so that I can have both sets side by side?
Threaded View
Title | Author | Date |
---|---|---|
Keith Jamison | Feb 22, 2018 | |
Lucas Moro | Feb 26, 2018 | |
Lucas Moro | Feb 25, 2018 | |