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help > RE: Preprocessing failure, problem writing header
Jan 23, 2019 07:01 PM | Or Duek
RE: Preprocessing failure, problem writing header
I revive this thread because I meet the same error.
I'm working on a SLURM HPC. Up to now I had no issue at all.
The msg I get is:
I'm working on a SLURM HPC. Up to now I had no issue at all.
The msg I get is:
Done functional Direct Segmentation &
Normalization (simultaneous Grey/White/CSF segmentation and MNI
normalization)
Importing results to CONN project. Please wait...
saved /gpfs/ysm/project/oad4/connRuns/subject1253.0001190123131636073.dmat
Preparing functional Label current functional files as part of list of Secondary Datasets ("mni-space data" label). Please wait...
Performing functional Label current functional files as part of list of Secondary Datasets ("mni-space data" label). Please wait...
Done functional Label current functional files as part of list of Secondary Datasets ("mni-space data" label)
Importing results to CONN project. Please wait...
saved /gpfs/ysm/project/oad4/connRuns/subject1253.0001190123131636073.dmat
Preparing structural Center to (0,0,0) coordinates (translation). Please wait...
Performing structural Center to (0,0,0) coordinates (translation). Please wait...
Done structural Center to (0,0,0) coordinates (translation)
Importing results to CONN project. Please wait...
Structural centering translation x/y/z = [1.03630065917969 -22.6367492675781 -0.917098999023438] (Subject 1)
Structural centering translation x/y/z = [1.58317565917969 -22.5089416503906 -2.84763336181641] (Subject 1)
Error: Permission denied
There was a problem writing to the header of
"/gpfs/ysm/home/oad4/project/PTSD_KPE/Converted/kpe1253/kpe1253_scan2_pb1164_harpaz-rotem/MPRAGE/ckpe1253_t1_Sag_3D_MPRAGE.nii"
/gpfs/ysm/project/oad4/connRuns/subject1253.qlog/190123131636073/node.0001190123131636073.sh error
_NODE END_
Importing results to CONN project. Please wait...
saved /gpfs/ysm/project/oad4/connRuns/subject1253.0001190123131636073.dmat
Preparing functional Label current functional files as part of list of Secondary Datasets ("mni-space data" label). Please wait...
Performing functional Label current functional files as part of list of Secondary Datasets ("mni-space data" label). Please wait...
Done functional Label current functional files as part of list of Secondary Datasets ("mni-space data" label)
Importing results to CONN project. Please wait...
saved /gpfs/ysm/project/oad4/connRuns/subject1253.0001190123131636073.dmat
Preparing structural Center to (0,0,0) coordinates (translation). Please wait...
Performing structural Center to (0,0,0) coordinates (translation). Please wait...
Done structural Center to (0,0,0) coordinates (translation)
Importing results to CONN project. Please wait...
Structural centering translation x/y/z = [1.03630065917969 -22.6367492675781 -0.917098999023438] (Subject 1)
Structural centering translation x/y/z = [1.58317565917969 -22.5089416503906 -2.84763336181641] (Subject 1)
Error: Permission denied
There was a problem writing to the header of
"/gpfs/ysm/home/oad4/project/PTSD_KPE/Converted/kpe1253/kpe1253_scan2_pb1164_harpaz-rotem/MPRAGE/ckpe1253_t1_Sag_3D_MPRAGE.nii"
/gpfs/ysm/project/oad4/connRuns/subject1253.qlog/190123131636073/node.0001190123131636073.sh error
_NODE END_
Threaded View
Title | Author | Date |
---|---|---|
Jeremy Hogeveen | May 12, 2016 | |
Or Duek | Jan 24, 2019 | |
Or Duek | Jan 23, 2019 | |
Alfonso Nieto-Castanon | May 13, 2016 | |
Jeremy Hogeveen | May 13, 2016 | |
Alfonso Nieto-Castanon | May 17, 2016 | |
Jeremy Hogeveen | May 19, 2016 | |
Alfonso Nieto-Castanon | May 19, 2016 | |
Jeremy Hogeveen | May 19, 2016 | |
Alfonso Nieto-Castanon | May 19, 2016 | |
Jeremy Hogeveen | May 19, 2016 | |
Alfonso Nieto-Castanon | May 20, 2016 | |
Jeremy Hogeveen | Jun 7, 2016 | |