users > RE: CMTK failing after affine registration
Jul 27, 2020  02:07 PM | Dana Hodorovich - North Carolina State University
RE: CMTK failing after affine registration
Originally posted by Owen Randlett:
> I think maybe the problem is the double quotes here - "--accuracy 0.4" -W
> "--accuracy 1.6"
>

Try with single quotation marks. I hand had issues with the quotes
before...

>
Hello Dr. Randlett,

When I replace the double quotations this is the output I receive:

C:\Users\danah\CMTKregistration\CMTKreg>perl "C:\Users\danah\CMTKregistration\CMTK\bin\munger" -b "C:\Users\danah\CMTKregistration\CMTK\bin" -v -a -w -r 0102 -T8 -X52 -C8 -G80 -R3 -A '--accuracy 0.4' -W '--accuracy 1.6' -s "template/template.nrrd" "images"
hostname = DESKTOP-J8LE56N; short hostname = DESKTOP-J8LE56N
User path is C:\Perl64\site\bin;C:\Perl64\bin;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Windows\System32\OpenSSH\;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common;C:\Program Files\NVIDIA Corporation\NVIDIA NvDLISR;C:\Program Files\Intel\WiFi\bin\;C:\Program Files\Common Files\Intel\WirelessCommon\;C:\Program Files\MATLAB\R2019a\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\WINDOWS\System32\OpenSSH\;C:\Program Files\SASHome\SASFoundation\9.4\core\sasexe;C:\Program Files\SASHome\SASFoundation\9.4\ets\sasexe;C:\Program Files\SASHome\Secure\ccme4;C:\Program Files\SASHome\x86\Secure\ccme4;C:\Strawberry\c\bin;C:\Strawberry\perl\site\bin;C:\Strawberry\perl\bin;C:\Users\danah\AppData\Local\Microsoft\WindowsApps;;C:\Users\danah\AppData\Local\Programs\Microsoft VS Code\bin
Reference brain is
Unable to read reference brain at C:\Users\danah\CMTKregistration\CMTK\bin\munger line 96.


Best,
Dana

Threaded View

TitleAuthorDate
Dana Hodorovich Jul 26, 2020
Owen Randlett Jul 26, 2020
RE: CMTK failing after affine registration
Dana Hodorovich Jul 27, 2020
Greg Jefferis Jul 26, 2020
Dana Hodorovich Jul 27, 2020
Greg Jefferis Jul 27, 2020
Dana Hodorovich Jul 27, 2020
Greg Jefferis Jul 28, 2020
Dana Hodorovich Aug 2, 2020
Greg Jefferis Aug 2, 2020
Dana Hodorovich Aug 2, 2020