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users > RE: CMTK failing after affine registration
Jul 27, 2020 02:07 PM | Dana Hodorovich - North Carolina State University
RE: CMTK failing after affine registration
Originally posted by Owen Randlett:
When I replace the double quotations this is the output I receive:
C:\Users\danah\CMTKregistration\CMTKreg>perl "C:\Users\danah\CMTKregistration\CMTK\bin\munger" -b "C:\Users\danah\CMTKregistration\CMTK\bin" -v -a -w -r 0102 -T8 -X52 -C8 -G80 -R3 -A '--accuracy 0.4' -W '--accuracy 1.6' -s "template/template.nrrd" "images"
hostname = DESKTOP-J8LE56N; short hostname = DESKTOP-J8LE56N
User path is C:\Perl64\site\bin;C:\Perl64\bin;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Windows\System32\OpenSSH\;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common;C:\Program Files\NVIDIA Corporation\NVIDIA NvDLISR;C:\Program Files\Intel\WiFi\bin\;C:\Program Files\Common Files\Intel\WirelessCommon\;C:\Program Files\MATLAB\R2019a\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\WINDOWS\System32\OpenSSH\;C:\Program Files\SASHome\SASFoundation\9.4\core\sasexe;C:\Program Files\SASHome\SASFoundation\9.4\ets\sasexe;C:\Program Files\SASHome\Secure\ccme4;C:\Program Files\SASHome\x86\Secure\ccme4;C:\Strawberry\c\bin;C:\Strawberry\perl\site\bin;C:\Strawberry\perl\bin;C:\Users\danah\AppData\Local\Microsoft\WindowsApps;;C:\Users\danah\AppData\Local\Programs\Microsoft VS Code\bin
Reference brain is
Unable to read reference brain at C:\Users\danah\CMTKregistration\CMTK\bin\munger line 96.
Best,
Dana
> I think maybe the problem is the double
quotes here - "--accuracy 0.4" -W
> "--accuracy 1.6"
>
Try with single quotation marks. I hand had issues with the quotes
before...
>
Hello Dr. Randlett,> "--accuracy 1.6"
>
Try with single quotation marks. I hand had issues with the quotes
before...
>
When I replace the double quotations this is the output I receive:
C:\Users\danah\CMTKregistration\CMTKreg>perl "C:\Users\danah\CMTKregistration\CMTK\bin\munger" -b "C:\Users\danah\CMTKregistration\CMTK\bin" -v -a -w -r 0102 -T8 -X52 -C8 -G80 -R3 -A '--accuracy 0.4' -W '--accuracy 1.6' -s "template/template.nrrd" "images"
hostname = DESKTOP-J8LE56N; short hostname = DESKTOP-J8LE56N
User path is C:\Perl64\site\bin;C:\Perl64\bin;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Windows\System32\OpenSSH\;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common;C:\Program Files\NVIDIA Corporation\NVIDIA NvDLISR;C:\Program Files\Intel\WiFi\bin\;C:\Program Files\Common Files\Intel\WirelessCommon\;C:\Program Files\MATLAB\R2019a\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\WINDOWS\System32\OpenSSH\;C:\Program Files\SASHome\SASFoundation\9.4\core\sasexe;C:\Program Files\SASHome\SASFoundation\9.4\ets\sasexe;C:\Program Files\SASHome\Secure\ccme4;C:\Program Files\SASHome\x86\Secure\ccme4;C:\Strawberry\c\bin;C:\Strawberry\perl\site\bin;C:\Strawberry\perl\bin;C:\Users\danah\AppData\Local\Microsoft\WindowsApps;;C:\Users\danah\AppData\Local\Programs\Microsoft VS Code\bin
Reference brain is
Unable to read reference brain at C:\Users\danah\CMTKregistration\CMTK\bin\munger line 96.
Best,
Dana
Threaded View
Title | Author | Date |
---|---|---|
Dana Hodorovich | Jul 26, 2020 | |
Owen Randlett | Jul 26, 2020 | |
Dana Hodorovich | Jul 27, 2020 | |
Greg Jefferis | Jul 26, 2020 | |
Dana Hodorovich | Jul 27, 2020 | |
Greg Jefferis | Jul 27, 2020 | |
Dana Hodorovich | Jul 27, 2020 | |
Greg Jefferis | Jul 28, 2020 | |
Dana Hodorovich | Aug 2, 2020 | |
Greg Jefferis | Aug 2, 2020 | |
Dana Hodorovich | Aug 2, 2020 | |