Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
956262
2
Nilearn
900276
3
BIDScoin
541371
4
ITK-SNAP
460890
5
FCP/INDI PRIVATE SITE
374621
6
IIT Human Brain Atlas (v.5.0)
213981
7
fMRI-CPCA
205267
8
MRIcroGL
199227
9
CONN : functional connectivity toolbox
193766
10
1000 Functional Connectomes Project
182423
11
BrainNet Viewer
113085
12
DTI-TK
95784
13
IBSR
80815
14
BioImage Suite
77913
15
BXH/XCEDE Tools
77795
16
NIDB - Neuroinformatics Database
74523
17
Multi-Modal MRI Reproducibility Resource
74118
18
age-ility
73542
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
68019
20
WFU_PickAtlas
66070
21
Solar Eclipse Imaging Genetics tools
60916
22
JIST: Java Image Science Toolkit
59653
23
BrainFlow
55040
24
PANDA: a pipeline tool for diffusion MRI
50358
25
GIFTI
50184
26
The Neuro Bureau
49910
27
NITRC Computational Environment (NITRC-CE)
45827
28
Functional Imaging BIRN
44930
29
3T DWI test-retest reliability dataset
44422
30
fNIRS Data Analysis Environment
40554
31
TOADS-CRUISE Brain Segmentation Tools
40433
32
EEGLAB
40043
33
FreeSurfer
37986
34
Generalized PPI Toolbox
36925
35
BrainMap Database
34850
36
Multimodal Visual Consciousness Study Dataset
34837
37
QuickNII - Serial section aligner to volumetric atlases
33972
38
Network-Based Statistic (NBS)
32372
39
MIITRA atlas
30421
40
NeuroImaging Analysis Kit (NIAK)
29943
41
UNC 0-1-2 Infant Atlases
29868
42
Homer2
28358
43
Brain Biomechanics Imaging Resources
27767
44
NeuroDebian
26441
45
Anima
26261
46
NYU CSC TestRetest
25809
47
BrainVisa Morphologist extensions
25629
48
TumorSim
25004
49
DWI/DTI Quality Control Tool: DTIPrep
24711
50
XNAT Extras
23810
51
Graph Theory GLM (GTG) MATLAB Toolbox
21839
52
Neuroimaging Made Easy Blog
21345
53
Melbourne Subcortex Atlas
21250
54
CBS High-Res Brain Processing Tools
20791
55
4D UNC Neonatal and Infant Cortical Surface Atlases
20740
56
SPHARM-PDM Toolbox
20301
57
Mango
19141
58
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
18871
59
Data Format Tools
18492
60
Surf Ice
18366
61
Vaa3D and Vaa3D-Neuron
18227
62
MITK Diffusion
18220
63
Automatic Registration Toolbox
18219
64
SRI24 Atlas: Normal Adult Brain Anatomy
18218
65
Fast Nonlocal Means for MRI denoising
18049
66
BrainMask Volume Processing Tool
17648
67
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
17421
68
GRETNA
17412
69
CANDI Neuroimaging Access Point
17082
70
Group ICA Toolbox (GIFT and EEGIFT)
16953
71
Talairach Daemon
16568
72
Diffusion Toolkit / TrackVis
16255
73
3D Slicer
16143
74
Spatially Constrained Parcellation
16014
75
Subject Order-Independent Group ICA
16008
76
3DSlicerLupusLesionModule
15813
77
DCP：Diffusion Connectome Pipeline
15792
78
Freesurfer fsaverage
15669
79
Computational Morphometry Toolkit (CMTK)
15594
80
Awake Rat rsfMRI Database
15355
81
BrainSuite
15292
82
Human Imaging Database (HID)
14871
83
MRtrix
14410
84
SVNTest
14298
85
Hammer And WML Modules for 3D Slicer
14253
86
ShapePopulationViewer
13981
87
ENIGMA-DTI pipeline
13953
88
Brainstorm
13837
89
FSL
13755
90
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13654
91
MARS (Multi-Atlas Robust Segmentation)
13446
92
dcm2nii
13180
93
Artifact Detection Tools (ART)
12941
94
libminc - Medical Image NetCDF library
12846
95
AutoSeg
12595
96
Nighres
12159
97
NIfTI
11874
98
BrainVISA
11840
99
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11809
100
ABSORB for groupwise registration
11764