Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
BIDScoin
1438656
2
Nilearn
1284579
3
MRIcron
1055417
4
ITK-SNAP
492807
5
FCP/INDI PRIVATE SITE
419021
6
IIT Human Brain Atlas (v.5.0)
274402
7
CONN : functional connectivity toolbox
254730
8
MRIcroGL
222089
9
fMRI-CPCA
216877
10
1000 Functional Connectomes Project
187977
11
BrainNet Viewer
148589
12
BXH/XCEDE Tools
142598
13
NIDB - Neuroinformatics Database
131626
14
age-ility
118450
15
BioImage Suite
103278
16
DTI-TK
102389
17
JIST: Java Image Science Toolkit
99725
18
Solar Eclipse Imaging Genetics tools
97090
19
BrainFlow
96728
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
91289
21
IBSR
87634
22
Multi-Modal MRI Reproducibility Resource
84402
23
GIFTI
69885
24
NITRC Computational Environment (NITRC-CE)
69792
25
WFU_PickAtlas
68051
26
PANDA: a pipeline tool for diffusion MRI
60203
27
Multimodal Visual Consciousness Study Dataset
59717
28
3T DWI test-retest reliability dataset
56914
29
The Neuro Bureau
56185
30
Standard Amygdalar fMRI Probe Tasks
55971
31
Functional Imaging BIRN
55399
32
QuickNII - Serial section aligner to volumetric atlases
51944
33
TOADS-CRUISE Brain Segmentation Tools
50761
34
Generalized PPI Toolbox
48651
35
MIITRA atlas
47915
36
BrainMap Database
47595
37
Melbourne Subcortex Atlas
47438
38
fNIRS Data Analysis Environment
45871
39
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
43680
40
NeuroImaging Analysis Kit (NIAK)
42141
41
Network-Based Statistic (NBS)
42095
42
Brain Biomechanics Imaging Resources
41557
43
CBS High-Res Brain Processing Tools
41479
44
DWI/DTI Quality Control Tool: DTIPrep
40874
45
EEGLAB
40140
46
UNC 0-1-2 Infant Atlases
39656
47
Graph Theory GLM (GTG) MATLAB Toolbox
39348
48
FreeSurfer
38011
49
TumorSim
36631
50
Homer2
33507
51
4D UNC Neonatal and Infant Cortical Surface Atlases
33339
52
NYU CSC TestRetest
31629
53
SPHARM-PDM Toolbox
30237
54
BrainVisa Morphologist extensions
30056
55
NeuroDebian
30046
56
Anima
29529
57
XNAT Extras
29083
58
ANDA
28929
59
Multi-site Frequency Drift MR Spectroscopy
27700
60
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
26672
61
SRI24 Atlas: Normal Adult Brain Anatomy
26522
62
BrainMask Volume Processing Tool
26444
63
CANDI Neuroimaging Access Point
26437
64
Neuroimaging Made Easy Blog
26028
65
ShapePopulationViewer
25600
66
3DSlicerLupusLesionModule
24959
67
AutoSeg
24557
68
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
24238
69
MRtrix
23171
70
NeuroDOT
22659
71
Awake Rat rsfMRI Database
22523
72
Data Format Tools
22394
73
Fast Nonlocal Means for MRI denoising
22333
74
Vaa3D and Vaa3D-Neuron
22305
75
Hammer And WML Modules for 3D Slicer
21180
76
Group ICA Toolbox (GIFT and EEGIFT)
20999
77
Surf Ice
20379
78
Mango
20141
79
Automatic Registration Toolbox
19919
80
Talairach Daemon
19681
81
Human Imaging Database (HID)
19606
82
Subject Order-Independent Group ICA
19143
83
ENIGMA-DTI pipeline
19088
84
3D Slicer
19086
85
ReproNim: A Center for Reproducible Neuroimaging Computation
19060
86
3DMeshMetric
19042
87
Freesurfer fsaverage
18822
88
MITK Diffusion
18814
89
Computational Morphometry Toolkit (CMTK)
18592
90
BrainSuite
18389
91
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
18312
92
DCP：Diffusion Connectome Pipeline
18233
93
GRETNA
18219
94
Neurosynth Compose
18089
95
MARS (Multi-Atlas Robust Segmentation)
18066
96
Diffusion Toolkit / TrackVis
17872
97
Spatially Constrained Parcellation
17548
98
Group Sparse Canonical Correlation Analysis
17483
99
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
17319
100
Maps4Mipav (Exploratory JIST)
17036