Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
895352
2
Nilearn
577095
3
ITK-SNAP
426671
4
FCP/INDI PRIVATE SITE
314165
5
1000 Functional Connectomes Project
175104
6
IIT Human Brain Atlas (v.5.0)
166730
7
MRIcroGL
165913
8
CONN : functional connectivity toolbox
159324
9
BIDScoin
118474
10
fMRI-CPCA
97290
11
BrainNet Viewer
93194
12
DTI-TK
90308
13
IBSR
74860
14
BioImage Suite
69909
15
Multi-Modal MRI Reproducibility Resource
64429
16
WFU_PickAtlas
62093
17
age-ility
53809
18
BXH/XCEDE Tools
48738
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
45979
20
Solar Eclipse Imaging Genetics tools
44136
21
PANDA: a pipeline tool for diffusion MRI
44081
22
JIST: Java Image Science Toolkit
43170
23
The Neuro Bureau
42633
24
EEGLAB
39826
25
GIFTI
38871
26
FreeSurfer
37885
27
NIDB - Neuroinformatics Database
37438
28
TOADS-CRUISE Brain Segmentation Tools
36960
29
Functional Imaging BIRN
35739
30
fNIRS Data Analysis Environment
35678
31
3T DWI test-retest reliability dataset
33537
32
NITRC Computational Environment (NITRC-CE)
32588
33
Generalized PPI Toolbox
32489
34
BrainMap Database
27978
35
Homer2
24897
36
Network-Based Statistic (NBS)
23800
37
NeuroDebian
23276
38
Anima
23222
39
BrainVisa Morphologist extensions
22265
40
NYU CSC TestRetest
21591
41
UNC 0-1-2 Infant Atlases
20994
42
QuickNII - Serial section aligner to volumetric atlases
20190
43
XNAT Extras
19497
44
Brain Biomechanics Imaging Resources
19403
45
BrainFlow
19336
46
Mango
18121
47
MITK Diffusion
17562
48
Melbourne Subcortex Atlas
17165
49
Neuroimaging Made Easy Blog
16735
50
Automatic Registration Toolbox
16704
51
GRETNA
16080
52
Data Format Tools
15991
53
Surf Ice
15942
54
Vaa3D and Vaa3D-Neuron
15132
55
3D Slicer
15123
56
Multimodal Visual Consciousness Study Dataset
14962
57
CBS High-Res Brain Processing Tools
14820
58
Diffusion Toolkit / TrackVis
14787
59
Talairach Daemon
14739
60
Spatially Constrained Parcellation
14567
61
Freesurfer fsaverage
14012
62
DCP：Diffusion Connectome Pipeline
13955
63
SRI24 Atlas: Normal Adult Brain Anatomy
13843
64
Brainstorm
13725
65
Group ICA Toolbox (GIFT and EEGIFT)
13713
66
Computational Morphometry Toolkit (CMTK)
13319
67
BrainMask Volume Processing Tool
13179
68
CANDI Neuroimaging Access Point
12924
69
dcm2nii
12817
70
MRtrix
12665
71
libminc - Medical Image NetCDF library
12652
72
3DSlicerLupusLesionModule
12527
73
BrainSuite
12518
74
FSL
12266
75
Human Imaging Database (HID)
12187
76
DWI/DTI Quality Control Tool: DTIPrep
11926
77
Subject Order-Independent Group ICA
11904
78
4D UNC Neonatal and Infant Cortical Surface Atlases
11757
79
Artifact Detection Tools (ART)
11750
80
TumorSim
11742
81
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
11574
82
Hammer And WML Modules for 3D Slicer
11356
83
BrainVISA
11189
84
2008 MICCAI MS Lesion Segmentation Challenge
10932
85
NeuroImaging Analysis Kit (NIAK)
10902
86
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10815
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
10489
88
Awake Rat rsfMRI Database
10440
89
NODDI Matlab Toolbox
10321
90
ENIGMA-DTI pipeline
10240
91
SPM for fNIRS toolbox
10232
92
Diffusional Kurtosis Estimator
10175
93
NIfTI
10120
94
MIITRA atlas
10106
95
Source Information Flow Toolbox
9919
96
Task Independent Fluctuations Discussion
9762
97
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9702
98
MARS (Multi-Atlas Robust Segmentation)
9531
99
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9387
100
SPHARM-PDM Toolbox
9045