Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
868429
2
Nilearn
503129
3
ITK-SNAP
413728
4
FCP/INDI PRIVATE SITE
286787
5
1000 Functional Connectomes Project
172010
6
IIT Human Brain Atlas (v.5.0)
154063
7
MRIcroGL
152051
8
CONN : functional connectivity toolbox
149329
9
DTI-TK
88565
10
BrainNet Viewer
85962
11
IBSR
71595
12
Multi-Modal MRI Reproducibility Resource
60457
13
WFU_PickAtlas
59768
14
BioImage Suite
56664
15
age-ility
49480
16
fMRI-CPCA
48871
17
BXH/XCEDE Tools
45259
18
PANDA: a pipeline tool for diffusion MRI
41787
19
Solar Eclipse Imaging Genetics tools
40637
20
EEGLAB
39714
21
Waxholm Space Atlas of the Sprague Dawley Rat Brain
39707
22
The Neuro Bureau
39196
23
JIST: Java Image Science Toolkit
39081
24
FreeSurfer
37846
25
BIDScoin
37722
26
TOADS-CRUISE Brain Segmentation Tools
36251
27
GIFTI
35902
28
fNIRS Data Analysis Environment
33581
29
Functional Imaging BIRN
33381
30
Generalized PPI Toolbox
31085
31
NITRC Computational Environment (NITRC-CE)
29316
32
3T DWI test-retest reliability dataset
29180
33
NIDB - Neuroinformatics Database
27100
34
BrainMap Database
25643
35
Homer2
23610
36
NeuroDebian
21914
37
Network-Based Statistic (NBS)
21733
38
Anima
21379
39
BrainVisa Morphologist extensions
20892
40
NYU CSC TestRetest
20211
41
UNC 0-1-2 Infant Atlases
18870
42
XNAT Extras
17718
43
Mango
17571
44
MITK Diffusion
17235
45
Neuroimaging Made Easy Blog
16213
46
Automatic Registration Toolbox
15747
47
GRETNA
15393
48
QuickNII - Serial section aligner to volumetric atlases
15317
49
Brain Biomechanics Imaging Resources
15261
50
Data Format Tools
14929
51
Surf Ice
14713
52
3D Slicer
14646
53
Talairach Daemon
14112
54
Diffusion Toolkit / TrackVis
14022
55
Spatially Constrained Parcellation
13979
56
Freesurfer fsaverage
13909
57
Vaa3D and Vaa3D-Neuron
13862
58
Brainstorm
13554
59
Melbourne Subcortex Atlas
13514
60
CBS High-Res Brain Processing Tools
13070
61
SRI24 Atlas: Normal Adult Brain Anatomy
13047
62
DCP：Diffusion Connectome Pipeline
13044
63
Group ICA Toolbox (GIFT and EEGIFT)
12741
64
dcm2nii
12619
65
libminc - Medical Image NetCDF library
12558
66
MRtrix
12376
67
BrainMask Volume Processing Tool
12202
68
Computational Morphometry Toolkit (CMTK)
12089
69
3DSlicerLupusLesionModule
11691
70
FSL
11628
71
CANDI Neuroimaging Access Point
11465
72
Artifact Detection Tools (ART)
11434
73
BrainSuite
11303
74
DWI/DTI Quality Control Tool: DTIPrep
11287
75
Human Imaging Database (HID)
11203
76
Subject Order-Independent Group ICA
11169
77
TumorSim
11010
78
BrainVISA
10884
79
2008 MICCAI MS Lesion Segmentation Challenge
10847
80
Hammer And WML Modules for 3D Slicer
10712
81
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10552
82
NeuroImaging Analysis Kit (NIAK)
10370
83
4D UNC Neonatal and Infant Cortical Surface Atlases
9935
84
NODDI Matlab Toolbox
9888
85
SPM for fNIRS toolbox
9844
86
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
9800
87
Source Information Flow Toolbox
9709
88
Diffusional Kurtosis Estimator
9630
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9616
90
Multimodal Visual Consciousness Study Dataset
9556
91
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9410
92
NIfTI
9288
93
ENIGMA-DTI pipeline
9245
94
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9029
95
Task Independent Fluctuations Discussion
8966
96
Awake Rat rsfMRI Database
8765
97
MARS (Multi-Atlas Robust Segmentation)
8681
98
SPHARM-PDM Toolbox
8576
99
Robust Brain Extraction (ROBEX)
8378
100
BrainFlow
8238