Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
971445
2
Nilearn
954031
3
BIDScoin
660806
4
ITK-SNAP
465253
5
FCP/INDI PRIVATE SITE
381110
6
IIT Human Brain Atlas (v.5.0)
221240
7
fMRI-CPCA
206412
8
MRIcroGL
203493
9
CONN : functional connectivity toolbox
200206
10
1000 Functional Connectomes Project
183424
11
BrainNet Viewer
117828
12
DTI-TK
96555
13
BXH/XCEDE Tools
86146
14
NIDB - Neuroinformatics Database
82498
15
IBSR
81677
16
BioImage Suite
79667
17
age-ility
78984
18
Multi-Modal MRI Reproducibility Resource
75651
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
71110
20
Solar Eclipse Imaging Genetics tools
66494
21
WFU_PickAtlas
66467
22
JIST: Java Image Science Toolkit
64219
23
BrainFlow
60405
24
GIFTI
52892
25
PANDA: a pipeline tool for diffusion MRI
52453
26
The Neuro Bureau
50654
27
NITRC Computational Environment (NITRC-CE)
50164
28
3T DWI test-retest reliability dataset
46373
29
Functional Imaging BIRN
46372
30
TOADS-CRUISE Brain Segmentation Tools
41653
31
fNIRS Data Analysis Environment
41337
32
EEGLAB
40061
33
Multimodal Visual Consciousness Study Dataset
38602
34
Generalized PPI Toolbox
38477
35
FreeSurfer
37987
36
BrainMap Database
35911
37
QuickNII - Serial section aligner to volumetric atlases
35872
38
Network-Based Statistic (NBS)
33981
39
MIITRA atlas
32469
40
NeuroImaging Analysis Kit (NIAK)
31899
41
UNC 0-1-2 Infant Atlases
31023
42
Brain Biomechanics Imaging Resources
29478
43
Homer2
29147
44
NeuroDebian
26984
45
Anima
26649
46
DWI/DTI Quality Control Tool: DTIPrep
26585
47
NYU CSC TestRetest
26306
48
BrainVisa Morphologist extensions
26268
49
TumorSim
26240
50
XNAT Extras
24475
51
Graph Theory GLM (GTG) MATLAB Toolbox
24330
52
CBS High-Res Brain Processing Tools
22730
53
Melbourne Subcortex Atlas
22550
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
22315
55
Neuroimaging Made Easy Blog
22085
56
4D UNC Neonatal and Infant Cortical Surface Atlases
22060
57
SPHARM-PDM Toolbox
21474
58
SRI24 Atlas: Normal Adult Brain Anatomy
19568
59
Mango
19295
60
Data Format Tools
19053
61
Vaa3D and Vaa3D-Neuron
18821
62
Fast Nonlocal Means for MRI denoising
18804
63
BrainMask Volume Processing Tool
18774
64
Surf Ice
18633
65
Automatic Registration Toolbox
18463
66
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
18440
67
MITK Diffusion
18305
68
CANDI Neuroimaging Access Point
18223
69
GRETNA
17514
70
Group ICA Toolbox (GIFT and EEGIFT)
17496
71
Talairach Daemon
16898
72
3DSlicerLupusLesionModule
16847
73
Diffusion Toolkit / TrackVis
16497
74
Subject Order-Independent Group ICA
16485
75
Awake Rat rsfMRI Database
16348
76
Spatially Constrained Parcellation
16237
77
DCP：Diffusion Connectome Pipeline
16214
78
3D Slicer
16205
79
Freesurfer fsaverage
15991
80
Computational Morphometry Toolkit (CMTK)
15936
81
BrainSuite
15737
82
MRtrix
15607
83
Human Imaging Database (HID)
15496
84
ShapePopulationViewer
15412
85
Hammer And WML Modules for 3D Slicer
15273
86
ENIGMA-DTI pipeline
14841
87
AutoSeg
14331
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14250
89
MARS (Multi-Atlas Robust Segmentation)
14155
90
FSL
14049
91
Brainstorm
13841
92
Artifact Detection Tools (ART)
13376
93
dcm2nii
13219
94
libminc - Medical Image NetCDF library
12871
95
Nighres
12595
96
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
12377
97
ABSORB for groupwise registration
12309
98
Maps4Mipav (Exploratory JIST)
12201
99
NIfTI
12189
100
ANDA
12142