Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1086078
2
MRIcron
1010740
3
BIDScoin
890396
4
ITK-SNAP
476284
5
FCP/INDI PRIVATE SITE
395368
6
IIT Human Brain Atlas (v.5.0)
236608
7
CONN : functional connectivity toolbox
221121
8
MRIcroGL
211576
9
fMRI-CPCA
209535
10
1000 Functional Connectomes Project
185298
11
BrainNet Viewer
129288
12
BXH/XCEDE Tools
107923
13
NIDB - Neuroinformatics Database
99000
14
DTI-TK
98998
15
age-ility
89808
16
IBSR
84032
17
BioImage Suite
83439
18
Multi-Modal MRI Reproducibility Resource
78469
19
Solar Eclipse Imaging Genetics tools
78208
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
77937
21
JIST: Java Image Science Toolkit
74061
22
BrainFlow
71913
23
WFU_PickAtlas
67194
24
GIFTI
59131
25
NITRC Computational Environment (NITRC-CE)
56732
26
PANDA: a pipeline tool for diffusion MRI
55412
27
The Neuro Bureau
52507
28
3T DWI test-retest reliability dataset
50064
29
Functional Imaging BIRN
49621
30
Multimodal Visual Consciousness Study Dataset
45775
31
TOADS-CRUISE Brain Segmentation Tools
44113
32
Generalized PPI Toolbox
43042
33
fNIRS Data Analysis Environment
42967
34
QuickNII - Serial section aligner to volumetric atlases
41196
35
EEGLAB
40101
36
BrainMap Database
38421
37
Network-Based Statistic (NBS)
38180
38
FreeSurfer
37995
39
MIITRA atlas
37245
40
Standard Amygdalar fMRI Probe Tasks
35906
41
NeuroImaging Analysis Kit (NIAK)
35328
42
UNC 0-1-2 Infant Atlases
34195
43
Brain Biomechanics Imaging Resources
33186
44
DWI/DTI Quality Control Tool: DTIPrep
31263
45
Graph Theory GLM (GTG) MATLAB Toolbox
31246
46
Homer2
31009
47
TumorSim
29901
48
CBS High-Res Brain Processing Tools
28331
49
NYU CSC TestRetest
28185
50
NeuroDebian
28180
51
Melbourne Subcortex Atlas
27938
52
BrainVisa Morphologist extensions
27637
53
Anima
27497
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
26397
55
XNAT Extras
26155
56
4D UNC Neonatal and Infant Cortical Surface Atlases
25535
57
SPHARM-PDM Toolbox
23986
58
Neuroimaging Made Easy Blog
23443
59
SRI24 Atlas: Normal Adult Brain Anatomy
21990
60
BrainMask Volume Processing Tool
21481
61
CANDI Neuroimaging Access Point
21308
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
20876
63
Data Format Tools
20322
64
Fast Nonlocal Means for MRI denoising
20302
65
Vaa3D and Vaa3D-Neuron
20114
66
Mango
19627
67
3DSlicerLupusLesionModule
19494
68
Surf Ice
19431
69
ShapePopulationViewer
19155
70
Group ICA Toolbox (GIFT and EEGIFT)
19011
71
Automatic Registration Toolbox
18967
72
MRtrix
18873
73
MITK Diffusion
18470
74
Awake Rat rsfMRI Database
18304
75
ANDA
18063
76
GRETNA
17841
77
Subject Order-Independent Group ICA
17748
78
Hammer And WML Modules for 3D Slicer
17668
79
Talairach Daemon
17546
80
DCP：Diffusion Connectome Pipeline
17143
81
Human Imaging Database (HID)
17095
82
Diffusion Toolkit / TrackVis
17029
83
AutoSeg
16980
84
Freesurfer fsaverage
16972
85
Spatially Constrained Parcellation
16755
86
ENIGMA-DTI pipeline
16685
87
BrainSuite
16669
88
Computational Morphometry Toolkit (CMTK)
16619
89
3D Slicer
16334
90
NeuroDOT
15761
91
Multi-site Frequency Drift MR Spectroscopy
15587
92
MARS (Multi-Atlas Robust Segmentation)
15324
93
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
15250
94
FSL
14696
95
ReproNim: A Center for Reproducible Neuroimaging Computation
14406
96
Artifact Detection Tools (ART)
13968
97
Maps4Mipav (Exploratory JIST)
13901
98
Brainstorm
13848
99
ABSORB for groupwise registration
13716
100
3DMeshMetric
13700