Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank
Tool/Resource name
Downloads
1
Nilearn
1189904
2
BIDScoin
1160072
3
MRIcron
1036486
4
ITK-SNAP
483725
5
FCP/INDI PRIVATE SITE
408019
6
IIT Human Brain Atlas (v.5.0)
250588
7
CONN : functional connectivity toolbox
241673
8
MRIcroGL
216984
9
fMRI-CPCA
211972
10
1000 Functional Connectomes Project
186719
11
BrainNet Viewer
137202
12
BXH/XCEDE Tools
122580
13
NIDB - Neuroinformatics Database
114191
14
DTI-TK
100722
15
age-ility
98326
16
BioImage Suite
89628
17
Solar Eclipse Imaging Genetics tools
86341
18
IBSR
85695
19
BrainFlow
83956
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
83454
21
JIST: Java Image Science Toolkit
82090
22
Multi-Modal MRI Reproducibility Resource
81021
23
WFU_PickAtlas
67625
24
GIFTI
63883
25
NITRC Computational Environment (NITRC-CE)
61796
26
PANDA: a pipeline tool for diffusion MRI
57738
27
The Neuro Bureau
54383
28
3T DWI test-retest reliability dataset
53167
29
Multimodal Visual Consciousness Study Dataset
52070
30
Functional Imaging BIRN
52062
31
Standard Amygdalar fMRI Probe Tasks
50469
32
TOADS-CRUISE Brain Segmentation Tools
46341
33
Generalized PPI Toolbox
46235
34
QuickNII - Serial section aligner to volumetric atlases
45149
35
fNIRS Data Analysis Environment
44183
36
MIITRA atlas
41369
37
Network-Based Statistic (NBS)
40608
38
BrainMap Database
40284
39
EEGLAB
40121
40
NeuroImaging Analysis Kit (NIAK)
38059
41
FreeSurfer
38005
42
Brain Biomechanics Imaging Resources
37416
43
UNC 0-1-2 Infant Atlases
36583
44
Graph Theory GLM (GTG) MATLAB Toolbox
35849
45
Melbourne Subcortex Atlas
35432
46
DWI/DTI Quality Control Tool: DTIPrep
34394
47
TumorSim
32712
48
CBS High-Res Brain Processing Tools
32611
49
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
32430
50
Homer2
32257
51
NYU CSC TestRetest
29595
52
NeuroDebian
29084
53
Anima
28778
54
BrainVisa Morphologist extensions
28686
55
4D UNC Neonatal and Infant Cortical Surface Atlases
28426
56
XNAT Extras
27406
57
SPHARM-PDM Toolbox
25959
58
Neuroimaging Made Easy Blog
24422
59
SRI24 Atlas: Normal Adult Brain Anatomy
24022
60
BrainMask Volume Processing Tool
23908
61
CANDI Neuroimaging Access Point
23583
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
23334
63
ANDA
23146
64
3DSlicerLupusLesionModule
22071
65
ShapePopulationViewer
22031
66
Fast Nonlocal Means for MRI denoising
21353
67
Data Format Tools
21347
68
Vaa3D and Vaa3D-Neuron
21157
69
MRtrix
21028
70
Awake Rat rsfMRI Database
20013
71
Group ICA Toolbox (GIFT and EEGIFT)
19966
72
Surf Ice
19965
73
Mango
19886
74
Multi-site Frequency Drift MR Spectroscopy
19550
75
Hammer And WML Modules for 3D Slicer
19533
76
Automatic Registration Toolbox
19438
77
AutoSeg
19430
78
NeuroDOT
18827
79
MITK Diffusion
18671
80
Subject Order-Independent Group ICA
18350
81
Human Imaging Database (HID)
18229
82
Talairach Daemon
18113
83
GRETNA
18069
84
DCP：Diffusion Connectome Pipeline
17795
85
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
17770
86
ENIGMA-DTI pipeline
17759
87
Freesurfer fsaverage
17520
88
BrainSuite
17473
89
Diffusion Toolkit / TrackVis
17455
90
3D Slicer
17420
91
Computational Morphometry Toolkit (CMTK)
17278
92
Spatially Constrained Parcellation
17143
93
ReproNim: A Center for Reproducible Neuroimaging Computation
16650
94
MARS (Multi-Atlas Robust Segmentation)
16414
95
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
16135
96
3DMeshMetric
15342
97
Maps4Mipav (Exploratory JIST)
15118
98
FSL
15008
99
Nutil - Neuroimaging utilities
14846
100
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
14740