Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank
Tool/Resource name
Downloads
1
BIDScoin
1256322
2
Nilearn
1217125
3
MRIcron
1044380
4
ITK-SNAP
486468
5
FCP/INDI PRIVATE SITE
411717
6
IIT Human Brain Atlas (v.5.0)
260048
7
CONN : functional connectivity toolbox
248223
8
MRIcroGL
218606
9
fMRI-CPCA
214451
10
1000 Functional Connectomes Project
187087
11
BrainNet Viewer
141450
12
BXH/XCEDE Tools
131270
13
NIDB - Neuroinformatics Database
119158
14
age-ility
110010
15
DTI-TK
101370
16
BioImage Suite
96276
17
Solar Eclipse Imaging Genetics tools
91375
18
BrainFlow
87602
19
JIST: Java Image Science Toolkit
86607
20
IBSR
86432
21
Waxholm Space Atlas of the Sprague Dawley Rat Brain
86180
22
Multi-Modal MRI Reproducibility Resource
82103
23
WFU_PickAtlas
67758
24
GIFTI
66150
25
NITRC Computational Environment (NITRC-CE)
65046
26
PANDA: a pipeline tool for diffusion MRI
58932
27
The Neuro Bureau
54834
28
Multimodal Visual Consciousness Study Dataset
54680
29
3T DWI test-retest reliability dataset
54293
30
Standard Amygdalar fMRI Probe Tasks
53501
31
Functional Imaging BIRN
53385
32
QuickNII - Serial section aligner to volumetric atlases
48088
33
TOADS-CRUISE Brain Segmentation Tools
47553
34
Generalized PPI Toolbox
47375
35
fNIRS Data Analysis Environment
44834
36
MIITRA atlas
43548
37
BrainMap Database
41857
38
Network-Based Statistic (NBS)
41067
39
Melbourne Subcortex Atlas
40522
40
EEGLAB
40126
41
NeuroImaging Analysis Kit (NIAK)
39762
42
Brain Biomechanics Imaging Resources
38841
43
FreeSurfer
38006
44
UNC 0-1-2 Infant Atlases
37850
45
Graph Theory GLM (GTG) MATLAB Toolbox
37731
46
DWI/DTI Quality Control Tool: DTIPrep
37463
47
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
37013
48
CBS High-Res Brain Processing Tools
34703
49
TumorSim
34610
50
Homer2
32845
51
4D UNC Neonatal and Infant Cortical Surface Atlases
30565
52
NYU CSC TestRetest
30336
53
NeuroDebian
29389
54
BrainVisa Morphologist extensions
29139
55
Anima
29136
56
XNAT Extras
27948
57
SPHARM-PDM Toolbox
27776
58
ANDA
25757
59
BrainMask Volume Processing Tool
25154
60
SRI24 Atlas: Normal Adult Brain Anatomy
25021
61
Neuroimaging Made Easy Blog
25018
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
25000
63
CANDI Neuroimaging Access Point
24975
64
ShapePopulationViewer
24016
65
3DSlicerLupusLesionModule
23494
66
Multi-site Frequency Drift MR Spectroscopy
22712
67
MRtrix
22284
68
Fast Nonlocal Means for MRI denoising
21828
69
AutoSeg
21781
70
Data Format Tools
21686
71
Vaa3D and Vaa3D-Neuron
21516
72
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
21025
73
Awake Rat rsfMRI Database
20922
74
Group ICA Toolbox (GIFT and EEGIFT)
20461
75
NeuroDOT
20244
76
Hammer And WML Modules for 3D Slicer
20199
77
Surf Ice
20098
78
Mango
19968
79
Automatic Registration Toolbox
19599
80
Human Imaging Database (HID)
18887
81
MITK Diffusion
18759
82
Subject Order-Independent Group ICA
18597
83
Talairach Daemon
18424
84
ENIGMA-DTI pipeline
18255
85
GRETNA
18122
86
Computational Morphometry Toolkit (CMTK)
18004
87
DCP：Diffusion Connectome Pipeline
17971
88
3D Slicer
17949
89
BrainSuite
17756
90
Freesurfer fsaverage
17745
91
ReproNim: A Center for Reproducible Neuroimaging Computation
17607
92
Diffusion Toolkit / TrackVis
17591
93
Spatially Constrained Parcellation
17285
94
3DMeshMetric
17255
95
MARS (Multi-Atlas Robust Segmentation)
17070
96
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
16640
97
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
16577
98
Maps4Mipav (Exploratory JIST)
16023
99
JIP fMRI Analysis Toolkit
15682
100
Nutil - Neuroimaging utilities
15589