Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
912417
2
Nilearn
615638
3
ITK-SNAP
433911
4
FCP/INDI PRIVATE SITE
330671
5
BIDScoin
185942
6
1000 Functional Connectomes Project
177079
7
MRIcroGL
176352
8
IIT Human Brain Atlas (v.5.0)
174464
9
CONN : functional connectivity toolbox
165563
10
fMRI-CPCA
98639
11
BrainNet Viewer
98040
12
DTI-TK
91231
13
IBSR
76865
14
BioImage Suite
72031
15
Multi-Modal MRI Reproducibility Resource
66483
16
WFU_PickAtlas
63142
17
age-ility
57193
18
BXH/XCEDE Tools
51765
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
49098
20
Solar Eclipse Imaging Genetics tools
46613
21
JIST: Java Image Science Toolkit
45411
22
PANDA: a pipeline tool for diffusion MRI
45324
23
The Neuro Bureau
44916
24
NIDB - Neuroinformatics Database
43652
25
GIFTI
40732
26
EEGLAB
39866
27
FreeSurfer
37944
28
TOADS-CRUISE Brain Segmentation Tools
37411
29
Functional Imaging BIRN
37159
30
fNIRS Data Analysis Environment
36710
31
3T DWI test-retest reliability dataset
35249
32
NITRC Computational Environment (NITRC-CE)
34736
33
Generalized PPI Toolbox
33219
34
BrainMap Database
29333
35
Homer2
25901
36
BrainFlow
25205
37
Network-Based Statistic (NBS)
25135
38
NeuroDebian
23967
39
Anima
23881
40
QuickNII - Serial section aligner to volumetric atlases
23149
41
NYU CSC TestRetest
23002
42
BrainVisa Morphologist extensions
22834
43
UNC 0-1-2 Infant Atlases
22482
44
Brain Biomechanics Imaging Resources
20812
45
XNAT Extras
20209
46
Mango
18365
47
Melbourne Subcortex Atlas
17848
48
MITK Diffusion
17797
49
Multimodal Visual Consciousness Study Dataset
17774
50
Neuroimaging Made Easy Blog
17142
51
Automatic Registration Toolbox
17040
52
Surf Ice
16610
53
GRETNA
16545
54
Data Format Tools
16517
55
Vaa3D and Vaa3D-Neuron
15694
56
CBS High-Res Brain Processing Tools
15683
57
3D Slicer
15392
58
Diffusion Toolkit / TrackVis
15093
59
Talairach Daemon
15047
60
Spatially Constrained Parcellation
14929
61
SRI24 Atlas: Normal Adult Brain Anatomy
14553
62
Group ICA Toolbox (GIFT and EEGIFT)
14432
63
DCP：Diffusion Connectome Pipeline
14278
64
Freesurfer fsaverage
14155
65
Computational Morphometry Toolkit (CMTK)
13901
66
CANDI Neuroimaging Access Point
13840
67
Brainstorm
13801
68
BrainMask Volume Processing Tool
13704
69
3DSlicerLupusLesionModule
13024
70
BrainSuite
13009
71
dcm2nii
12935
72
MRtrix
12863
73
4D UNC Neonatal and Infant Cortical Surface Atlases
12792
74
libminc - Medical Image NetCDF library
12716
75
Human Imaging Database (HID)
12615
76
FSL
12591
77
DWI/DTI Quality Control Tool: DTIPrep
12467
78
Subject Order-Independent Group ICA
12384
79
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
12212
80
TumorSim
12196
81
MIITRA atlas
12066
82
Artifact Detection Tools (ART)
12040
83
Hammer And WML Modules for 3D Slicer
11841
84
NeuroImaging Analysis Kit (NIAK)
11487
85
Awake Rat rsfMRI Database
11360
86
BrainVISA
11321
87
2008 MICCAI MS Lesion Segmentation Challenge
11015
88
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10952
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
10950
90
ENIGMA-DTI pipeline
10836
91
NODDI Matlab Toolbox
10530
92
SPM for fNIRS toolbox
10509
93
NIfTI
10497
94
Diffusional Kurtosis Estimator
10385
95
Task Independent Fluctuations Discussion
10067
96
Source Information Flow Toolbox
10005
97
MARS (Multi-Atlas Robust Segmentation)
10001
98
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9849
99
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9571
100
SPHARM-PDM Toolbox
9452