Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
927925
2
Nilearn
704490
3
ITK-SNAP
447197
4
BIDScoin
362089
5
FCP/INDI PRIVATE SITE
352813
6
fMRI-CPCA
196878
7
IIT Human Brain Atlas (v.5.0)
196094
8
MRIcroGL
186634
9
1000 Functional Connectomes Project
179616
10
CONN : functional connectivity toolbox
176917
11
BrainNet Viewer
104310
12
DTI-TK
92638
13
IBSR
78685
14
BioImage Suite
74700
15
Multi-Modal MRI Reproducibility Resource
69748
16
age-ility
65937
17
WFU_PickAtlas
64565
18
BXH/XCEDE Tools
63867
19
NIDB - Neuroinformatics Database
57594
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
54586
21
Solar Eclipse Imaging Genetics tools
50618
22
JIST: Java Image Science Toolkit
50356
23
The Neuro Bureau
47582
24
PANDA: a pipeline tool for diffusion MRI
47412
25
GIFTI
44497
26
BrainFlow
41300
27
EEGLAB
39943
28
Functional Imaging BIRN
39739
29
3T DWI test-retest reliability dataset
39503
30
NITRC Computational Environment (NITRC-CE)
39321
31
TOADS-CRUISE Brain Segmentation Tools
38589
32
fNIRS Data Analysis Environment
38331
33
FreeSurfer
37975
34
Generalized PPI Toolbox
34791
35
BrainMap Database
31928
36
Network-Based Statistic (NBS)
27393
37
QuickNII - Serial section aligner to volumetric atlases
27299
38
Homer2
26939
39
Multimodal Visual Consciousness Study Dataset
25759
40
NeuroDebian
25084
41
UNC 0-1-2 Infant Atlases
24991
42
Anima
24962
43
NYU CSC TestRetest
24731
44
BrainVisa Morphologist extensions
24199
45
Brain Biomechanics Imaging Resources
23518
46
XNAT Extras
21684
47
Neuroimaging Made Easy Blog
19030
48
Melbourne Subcortex Atlas
18889
49
Mango
18743
50
MITK Diffusion
17950
51
CBS High-Res Brain Processing Tools
17865
52
Automatic Registration Toolbox
17573
53
Data Format Tools
17556
54
MIITRA atlas
17465
55
Surf Ice
17449
56
Fast Nonlocal Means for MRI denoising
17066
57
GRETNA
16938
58
Vaa3D and Vaa3D-Neuron
16889
59
4D UNC Neonatal and Infant Cortical Surface Atlases
16527
60
SRI24 Atlas: Normal Adult Brain Anatomy
16447
61
3D Slicer
15750
62
Diffusion Toolkit / TrackVis
15645
63
Talairach Daemon
15641
64
Spatially Constrained Parcellation
15448
65
Group ICA Toolbox (GIFT and EEGIFT)
15375
66
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
15374
67
CANDI Neuroimaging Access Point
15287
68
DCP：Diffusion Connectome Pipeline
14910
69
Computational Morphometry Toolkit (CMTK)
14822
70
BrainMask Volume Processing Tool
14780
71
3DSlicerLupusLesionModule
14454
72
Freesurfer fsaverage
14388
73
BrainSuite
14028
74
DWI/DTI Quality Control Tool: DTIPrep
13941
75
Brainstorm
13824
76
Human Imaging Database (HID)
13563
77
MRtrix
13439
78
TumorSim
13401
79
Awake Rat rsfMRI Database
13361
80
Subject Order-Independent Group ICA
13230
81
FSL
13119
82
dcm2nii
13051
83
libminc - Medical Image NetCDF library
12771
84
Hammer And WML Modules for 3D Slicer
12715
85
NeuroImaging Analysis Kit (NIAK)
12683
86
Artifact Detection Tools (ART)
12420
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
12062
88
ENIGMA-DTI pipeline
11926
89
BrainVISA
11550
90
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11233
91
NIfTI
11136
92
2008 MICCAI MS Lesion Segmentation Challenge
11063
93
Task Independent Fluctuations Discussion
11050
94
Diffusional Kurtosis Estimator
10967
95
MARS (Multi-Atlas Robust Segmentation)
10906
96
SPM for fNIRS toolbox
10898
97
Graph Theory GLM (GTG) MATLAB Toolbox
10885
98
SPHARM-PDM Toolbox
10779
99
NODDI Matlab Toolbox
10734
100
SVNTest
10652