Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
914851
2
Nilearn
623896
3
ITK-SNAP
435157
4
FCP/INDI PRIVATE SITE
334015
5
BIDScoin
195125
6
MRIcroGL
177707
7
1000 Functional Connectomes Project
177447
8
IIT Human Brain Atlas (v.5.0)
176277
9
CONN : functional connectivity toolbox
166842
10
BrainNet Viewer
98910
11
fMRI-CPCA
98910
12
DTI-TK
91379
13
IBSR
77140
14
BioImage Suite
72246
15
Multi-Modal MRI Reproducibility Resource
66751
16
WFU_PickAtlas
63332
17
age-ility
58522
18
BXH/XCEDE Tools
52870
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
49717
20
Solar Eclipse Imaging Genetics tools
47142
21
JIST: Java Image Science Toolkit
46063
22
PANDA: a pipeline tool for diffusion MRI
45524
23
The Neuro Bureau
45309
24
NIDB - Neuroinformatics Database
44970
25
GIFTI
41134
26
EEGLAB
39874
27
FreeSurfer
37952
28
TOADS-CRUISE Brain Segmentation Tools
37551
29
Functional Imaging BIRN
37447
30
fNIRS Data Analysis Environment
36883
31
3T DWI test-retest reliability dataset
35638
32
NITRC Computational Environment (NITRC-CE)
35118
33
Generalized PPI Toolbox
33349
34
BrainMap Database
29624
35
BrainFlow
26542
36
Homer2
26046
37
Network-Based Statistic (NBS)
25387
38
NeuroDebian
24068
39
Anima
24027
40
NYU CSC TestRetest
24021
41
QuickNII - Serial section aligner to volumetric atlases
23641
42
BrainVisa Morphologist extensions
22950
43
UNC 0-1-2 Infant Atlases
22771
44
Brain Biomechanics Imaging Resources
21038
45
XNAT Extras
20395
46
Mango
18415
47
Multimodal Visual Consciousness Study Dataset
18304
48
Melbourne Subcortex Atlas
17938
49
MITK Diffusion
17828
50
Neuroimaging Made Easy Blog
17245
51
Automatic Registration Toolbox
17085
52
Surf Ice
16741
53
Data Format Tools
16622
54
GRETNA
16604
55
CBS High-Res Brain Processing Tools
15943
56
Vaa3D and Vaa3D-Neuron
15783
57
3D Slicer
15434
58
Diffusion Toolkit / TrackVis
15164
59
Talairach Daemon
15130
60
Spatially Constrained Parcellation
14990
61
SRI24 Atlas: Normal Adult Brain Anatomy
14716
62
Group ICA Toolbox (GIFT and EEGIFT)
14555
63
DCP：Diffusion Connectome Pipeline
14323
64
Freesurfer fsaverage
14187
65
Computational Morphometry Toolkit (CMTK)
14010
66
CANDI Neuroimaging Access Point
13976
67
BrainMask Volume Processing Tool
13822
68
Brainstorm
13810
69
3DSlicerLupusLesionModule
13163
70
BrainSuite
13101
71
4D UNC Neonatal and Infant Cortical Surface Atlases
12997
72
dcm2nii
12954
73
MRtrix
12898
74
libminc - Medical Image NetCDF library
12719
75
Human Imaging Database (HID)
12719
76
MIITRA atlas
12711
77
FSL
12654
78
DWI/DTI Quality Control Tool: DTIPrep
12596
79
Subject Order-Independent Group ICA
12469
80
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
12451
81
TumorSim
12340
82
Artifact Detection Tools (ART)
12089
83
Hammer And WML Modules for 3D Slicer
11945
84
NeuroImaging Analysis Kit (NIAK)
11594
85
Awake Rat rsfMRI Database
11561
86
BrainVISA
11345
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
11059
88
2008 MICCAI MS Lesion Segmentation Challenge
11024
89
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10985
90
ENIGMA-DTI pipeline
10943
91
NIfTI
10583
92
NODDI Matlab Toolbox
10551
93
SPM for fNIRS toolbox
10550
94
Diffusional Kurtosis Estimator
10471
95
Task Independent Fluctuations Discussion
10169
96
MARS (Multi-Atlas Robust Segmentation)
10113
97
Source Information Flow Toolbox
10022
98
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9867
99
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9630
100
SPHARM-PDM Toolbox
9615