Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
931630
2
Nilearn
720666
3
ITK-SNAP
449481
4
BIDScoin
373563
5
FCP/INDI PRIVATE SITE
356259
6
IIT Human Brain Atlas (v.5.0)
197723
7
fMRI-CPCA
197255
8
MRIcroGL
188594
9
1000 Functional Connectomes Project
179955
10
CONN : functional connectivity toolbox
179018
11
BrainNet Viewer
105189
12
DTI-TK
92934
13
IBSR
78959
14
BioImage Suite
75131
15
Multi-Modal MRI Reproducibility Resource
70276
16
age-ility
66996
17
BXH/XCEDE Tools
65083
18
WFU_PickAtlas
64761
19
NIDB - Neuroinformatics Database
59702
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
55300
21
Solar Eclipse Imaging Genetics tools
51228
22
JIST: Java Image Science Toolkit
50970
23
The Neuro Bureau
47880
24
PANDA: a pipeline tool for diffusion MRI
47668
25
GIFTI
45101
26
BrainFlow
42632
27
Functional Imaging BIRN
40188
28
3T DWI test-retest reliability dataset
39960
29
EEGLAB
39956
30
NITRC Computational Environment (NITRC-CE)
39919
31
TOADS-CRUISE Brain Segmentation Tools
38800
32
fNIRS Data Analysis Environment
38632
33
FreeSurfer
37977
34
Generalized PPI Toolbox
35094
35
BrainMap Database
32279
36
Network-Based Statistic (NBS)
28093
37
QuickNII - Serial section aligner to volumetric atlases
27697
38
Homer2
27108
39
Multimodal Visual Consciousness Study Dataset
26929
40
UNC 0-1-2 Infant Atlases
25390
41
NeuroDebian
25290
42
Anima
25097
43
NYU CSC TestRetest
24983
44
BrainVisa Morphologist extensions
24364
45
Brain Biomechanics Imaging Resources
23878
46
XNAT Extras
21889
47
Neuroimaging Made Easy Blog
19203
48
Melbourne Subcortex Atlas
19102
49
Mango
18804
50
MIITRA atlas
18251
51
CBS High-Res Brain Processing Tools
18164
52
MITK Diffusion
17968
53
Data Format Tools
17712
54
Automatic Registration Toolbox
17677
55
Surf Ice
17578
56
Fast Nonlocal Means for MRI denoising
17128
57
Vaa3D and Vaa3D-Neuron
17055
58
GRETNA
16986
59
4D UNC Neonatal and Infant Cortical Surface Atlases
16901
60
SRI24 Atlas: Normal Adult Brain Anatomy
16634
61
3D Slicer
15802
62
Diffusion Toolkit / TrackVis
15736
63
Talairach Daemon
15705
64
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
15678
65
Group ICA Toolbox (GIFT and EEGIFT)
15604
66
CANDI Neuroimaging Access Point
15551
67
Spatially Constrained Parcellation
15532
68
DCP：Diffusion Connectome Pipeline
15036
69
BrainMask Volume Processing Tool
14996
70
Computational Morphometry Toolkit (CMTK)
14937
71
3DSlicerLupusLesionModule
14599
72
Freesurfer fsaverage
14507
73
BrainSuite
14236
74
DWI/DTI Quality Control Tool: DTIPrep
14129
75
Brainstorm
13825
76
Human Imaging Database (HID)
13682
77
Awake Rat rsfMRI Database
13594
78
TumorSim
13569
79
MRtrix
13565
80
Subject Order-Independent Group ICA
13415
81
FSL
13223
82
dcm2nii
13070
83
Hammer And WML Modules for 3D Slicer
12897
84
NeuroImaging Analysis Kit (NIAK)
12860
85
libminc - Medical Image NetCDF library
12776
86
Artifact Detection Tools (ART)
12494
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
12213
88
ENIGMA-DTI pipeline
12154
89
BrainVISA
11584
90
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11276
91
NIfTI
11220
92
Task Independent Fluctuations Discussion
11142
93
SVNTest
11108
94
2008 MICCAI MS Lesion Segmentation Challenge
11082
95
MARS (Multi-Atlas Robust Segmentation)
11047
96
Diffusional Kurtosis Estimator
11043
97
Graph Theory GLM (GTG) MATLAB Toolbox
11017
98
SPHARM-PDM Toolbox
10972
99
SPM for fNIRS toolbox
10951
100
NODDI Matlab Toolbox
10779