Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1145148
2
BIDScoin
1055857
3
MRIcron
1029594
4
ITK-SNAP
481252
5
FCP/INDI PRIVATE SITE
403473
6
IIT Human Brain Atlas (v.5.0)
244489
7
CONN : functional connectivity toolbox
230859
8
MRIcroGL
214897
9
fMRI-CPCA
211077
10
1000 Functional Connectomes Project
186283
11
BrainNet Viewer
134305
12
BXH/XCEDE Tools
117554
13
NIDB - Neuroinformatics Database
108438
14
DTI-TK
100108
15
age-ility
93921
16
BioImage Suite
86010
17
IBSR
85277
18
Solar Eclipse Imaging Genetics tools
83763
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
81328
20
Multi-Modal MRI Reproducibility Resource
80037
21
BrainFlow
79558
22
JIST: Java Image Science Toolkit
78900
23
WFU_PickAtlas
67478
24
GIFTI
62293
25
NITRC Computational Environment (NITRC-CE)
60010
26
PANDA: a pipeline tool for diffusion MRI
57138
27
The Neuro Bureau
53865
28
3T DWI test-retest reliability dataset
52403
29
Functional Imaging BIRN
51149
30
Multimodal Visual Consciousness Study Dataset
49430
31
Standard Amygdalar fMRI Probe Tasks
49089
32
TOADS-CRUISE Brain Segmentation Tools
45607
33
Generalized PPI Toolbox
45579
34
fNIRS Data Analysis Environment
43737
35
QuickNII - Serial section aligner to volumetric atlases
43732
36
EEGLAB
40114
37
Network-Based Statistic (NBS)
40082
38
MIITRA atlas
40077
39
BrainMap Database
39524
40
FreeSurfer
38002
41
NeuroImaging Analysis Kit (NIAK)
37313
42
Brain Biomechanics Imaging Resources
36304
43
UNC 0-1-2 Infant Atlases
35808
44
Graph Theory GLM (GTG) MATLAB Toolbox
34645
45
DWI/DTI Quality Control Tool: DTIPrep
33261
46
TumorSim
32063
47
Homer2
31848
48
Melbourne Subcortex Atlas
31607
49
CBS High-Res Brain Processing Tools
31444
50
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
29733
51
NYU CSC TestRetest
28891
52
NeuroDebian
28782
53
Anima
28306
54
BrainVisa Morphologist extensions
28298
55
4D UNC Neonatal and Infant Cortical Surface Atlases
27353
56
XNAT Extras
26934
57
SPHARM-PDM Toolbox
24822
58
Neuroimaging Made Easy Blog
24093
59
SRI24 Atlas: Normal Adult Brain Anatomy
23458
60
BrainMask Volume Processing Tool
23278
61
CANDI Neuroimaging Access Point
22732
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
22705
63
ANDA
21852
64
3DSlicerLupusLesionModule
21336
65
Fast Nonlocal Means for MRI denoising
21066
66
Data Format Tools
21036
67
ShapePopulationViewer
20994
68
Vaa3D and Vaa3D-Neuron
20748
69
MRtrix
20413
70
Surf Ice
19815
71
Mango
19802
72
Group ICA Toolbox (GIFT and EEGIFT)
19668
73
Awake Rat rsfMRI Database
19403
74
Automatic Registration Toolbox
19289
75
Hammer And WML Modules for 3D Slicer
18979
76
AutoSeg
18620
77
MITK Diffusion
18596
78
Multi-site Frequency Drift MR Spectroscopy
18349
79
Subject Order-Independent Group ICA
18198
80
GRETNA
17986
81
Talairach Daemon
17902
82
Human Imaging Database (HID)
17809
83
NeuroDOT
17756
84
DCP：Diffusion Connectome Pipeline
17641
85
ENIGMA-DTI pipeline
17364
86
Diffusion Toolkit / TrackVis
17317
87
Freesurfer fsaverage
17304
88
BrainSuite
17199
89
Spatially Constrained Parcellation
17025
90
Computational Morphometry Toolkit (CMTK)
16930
91
3D Slicer
16907
92
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
16779
93
MARS (Multi-Atlas Robust Segmentation)
16049
94
ReproNim: A Center for Reproducible Neuroimaging Computation
15865
95
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
15829
96
FSL
14951
97
3DMeshMetric
14771
98
Maps4Mipav (Exploratory JIST)
14759
99
Artifact Detection Tools (ART)
14277
100
Nutil - Neuroimaging utilities
14194