Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
921671
2
Nilearn
670041
3
ITK-SNAP
440881
4
FCP/INDI PRIVATE SITE
343911
5
BIDScoin
264144
6
IIT Human Brain Atlas (v.5.0)
186785
7
MRIcroGL
182181
8
1000 Functional Connectomes Project
178660
9
CONN : functional connectivity toolbox
172380
10
fMRI-CPCA
105388
11
BrainNet Viewer
101933
12
DTI-TK
91991
13
IBSR
78004
14
BioImage Suite
73650
15
Multi-Modal MRI Reproducibility Resource
68259
16
WFU_PickAtlas
63956
17
age-ility
61450
18
BXH/XCEDE Tools
58419
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
52163
20
NIDB - Neuroinformatics Database
51074
21
Solar Eclipse Imaging Genetics tools
48754
22
JIST: Java Image Science Toolkit
48589
23
The Neuro Bureau
46650
24
PANDA: a pipeline tool for diffusion MRI
46594
25
GIFTI
42855
26
EEGLAB
39915
27
Functional Imaging BIRN
38532
28
TOADS-CRUISE Brain Segmentation Tools
38187
29
FreeSurfer
37972
30
fNIRS Data Analysis Environment
37661
31
3T DWI test-retest reliability dataset
37604
32
NITRC Computational Environment (NITRC-CE)
37522
33
BrainFlow
34337
34
Generalized PPI Toolbox
34054
35
BrainMap Database
30817
36
Homer2
26506
37
Network-Based Statistic (NBS)
26199
38
QuickNII - Serial section aligner to volumetric atlases
25757
39
NeuroDebian
24606
40
Anima
24600
41
NYU CSC TestRetest
24413
42
UNC 0-1-2 Infant Atlases
23878
43
BrainVisa Morphologist extensions
23582
44
Brain Biomechanics Imaging Resources
22602
45
Multimodal Visual Consciousness Study Dataset
21728
46
XNAT Extras
21049
47
Mango
18586
48
Neuroimaging Made Easy Blog
18481
49
Melbourne Subcortex Atlas
18397
50
MITK Diffusion
17903
51
Automatic Registration Toolbox
17348
52
Data Format Tools
17164
53
Surf Ice
17100
54
CBS High-Res Brain Processing Tools
16924
55
GRETNA
16779
56
Vaa3D and Vaa3D-Neuron
16332
57
SRI24 Atlas: Normal Adult Brain Anatomy
15607
58
3D Slicer
15600
59
Talairach Daemon
15431
60
Diffusion Toolkit / TrackVis
15424
61
Spatially Constrained Parcellation
15217
62
MIITRA atlas
15075
63
Group ICA Toolbox (GIFT and EEGIFT)
14943
64
CANDI Neuroimaging Access Point
14588
65
DCP：Diffusion Connectome Pipeline
14587
66
Computational Morphometry Toolkit (CMTK)
14442
67
BrainMask Volume Processing Tool
14352
68
Freesurfer fsaverage
14271
69
4D UNC Neonatal and Infant Cortical Surface Atlases
14256
70
Fast Nonlocal Means for MRI denoising
14089
71
Brainstorm
13822
72
3DSlicerLupusLesionModule
13808
73
BrainSuite
13653
74
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
13502
75
DWI/DTI Quality Control Tool: DTIPrep
13241
76
Human Imaging Database (HID)
13141
77
MRtrix
13068
78
dcm2nii
13003
79
FSL
12909
80
TumorSim
12875
81
Subject Order-Independent Group ICA
12788
82
libminc - Medical Image NetCDF library
12751
83
Awake Rat rsfMRI Database
12509
84
Hammer And WML Modules for 3D Slicer
12329
85
Artifact Detection Tools (ART)
12278
86
NeuroImaging Analysis Kit (NIAK)
12119
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
11517
88
BrainVISA
11453
89
ENIGMA-DTI pipeline
11383
90
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11139
91
2008 MICCAI MS Lesion Segmentation Challenge
11046
92
NIfTI
10851
93
Diffusional Kurtosis Estimator
10813
94
SPM for fNIRS toolbox
10748
95
NODDI Matlab Toolbox
10651
96
Task Independent Fluctuations Discussion
10607
97
MARS (Multi-Atlas Robust Segmentation)
10542
98
Graph Theory GLM (GTG) MATLAB Toolbox
10306
99
SPHARM-PDM Toolbox
10178
100
Source Information Flow Toolbox
10117