Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
891566
2
Nilearn
565426
3
ITK-SNAP
424713
4
FCP/INDI PRIVATE SITE
309996
5
1000 Functional Connectomes Project
174521
6
IIT Human Brain Atlas (v.5.0)
164681
7
MRIcroGL
163750
8
CONN : functional connectivity toolbox
157818
9
BIDScoin
106362
10
fMRI-CPCA
96974
11
BrainNet Viewer
92188
12
DTI-TK
90036
13
IBSR
74301
14
BioImage Suite
69101
15
Multi-Modal MRI Reproducibility Resource
63867
16
WFU_PickAtlas
61816
17
age-ility
53192
18
BXH/XCEDE Tools
48084
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
45036
20
PANDA: a pipeline tool for diffusion MRI
43768
21
Solar Eclipse Imaging Genetics tools
43577
22
JIST: Java Image Science Toolkit
42517
23
The Neuro Bureau
42256
24
EEGLAB
39804
25
GIFTI
38445
26
FreeSurfer
37869
27
TOADS-CRUISE Brain Segmentation Tools
36841
28
NIDB - Neuroinformatics Database
35680
29
fNIRS Data Analysis Environment
35395
30
Functional Imaging BIRN
35332
31
3T DWI test-retest reliability dataset
32828
32
Generalized PPI Toolbox
32316
33
NITRC Computational Environment (NITRC-CE)
31970
34
BrainMap Database
27561
35
Homer2
24737
36
Network-Based Statistic (NBS)
23531
37
NeuroDebian
23015
38
Anima
23004
39
BrainVisa Morphologist extensions
22040
40
NYU CSC TestRetest
21347
41
UNC 0-1-2 Infant Atlases
20595
42
QuickNII - Serial section aligner to volumetric atlases
19479
43
XNAT Extras
19181
44
Brain Biomechanics Imaging Resources
18871
45
BrainFlow
18093
46
Mango
18044
47
MITK Diffusion
17527
48
Melbourne Subcortex Atlas
16878
49
Neuroimaging Made Easy Blog
16678
50
Automatic Registration Toolbox
16589
51
GRETNA
15980
52
Data Format Tools
15812
53
Surf Ice
15781
54
3D Slicer
15050
55
Vaa3D and Vaa3D-Neuron
14980
56
Diffusion Toolkit / TrackVis
14682
57
Talairach Daemon
14652
58
CBS High-Res Brain Processing Tools
14567
59
Spatially Constrained Parcellation
14484
60
Multimodal Visual Consciousness Study Dataset
14032
61
Freesurfer fsaverage
13993
62
DCP：Diffusion Connectome Pipeline
13774
63
SRI24 Atlas: Normal Adult Brain Anatomy
13737
64
Brainstorm
13699
65
Group ICA Toolbox (GIFT and EEGIFT)
13581
66
Computational Morphometry Toolkit (CMTK)
13181
67
BrainMask Volume Processing Tool
13042
68
dcm2nii
12790
69
CANDI Neuroimaging Access Point
12683
70
MRtrix
12647
71
libminc - Medical Image NetCDF library
12640
72
3DSlicerLupusLesionModule
12390
73
BrainSuite
12264
74
FSL
12165
75
Human Imaging Database (HID)
12052
76
DWI/DTI Quality Control Tool: DTIPrep
11821
77
Subject Order-Independent Group ICA
11770
78
Artifact Detection Tools (ART)
11708
79
TumorSim
11602
80
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
11423
81
4D UNC Neonatal and Infant Cortical Surface Atlases
11356
82
Hammer And WML Modules for 3D Slicer
11260
83
BrainVISA
11153
84
2008 MICCAI MS Lesion Segmentation Challenge
10916
85
NeuroImaging Analysis Kit (NIAK)
10837
86
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10778
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
10323
88
NODDI Matlab Toolbox
10271
89
SPM for fNIRS toolbox
10181
90
Diffusional Kurtosis Estimator
10119
91
Awake Rat rsfMRI Database
10116
92
ENIGMA-DTI pipeline
10095
93
NIfTI
10018
94
Source Information Flow Toolbox
9894
95
Task Independent Fluctuations Discussion
9661
96
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9658
97
MIITRA atlas
9635
98
MARS (Multi-Atlas Robust Segmentation)
9418
99
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9358
100
SPHARM-PDM Toolbox
8976