Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1114254
2
MRIcron
1020084
3
BIDScoin
935576
4
ITK-SNAP
478564
5
FCP/INDI PRIVATE SITE
398912
6
IIT Human Brain Atlas (v.5.0)
240286
7
CONN : functional connectivity toolbox
225414
8
MRIcroGL
213134
9
fMRI-CPCA
210281
10
1000 Functional Connectomes Project
185687
11
BrainNet Viewer
131670
12
BXH/XCEDE Tools
113021
13
NIDB - Neuroinformatics Database
103007
14
DTI-TK
99567
15
age-ility
90969
16
IBSR
84637
17
BioImage Suite
84425
18
Solar Eclipse Imaging Genetics tools
80780
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
79451
20
Multi-Modal MRI Reproducibility Resource
79104
21
JIST: Java Image Science Toolkit
76449
22
BrainFlow
74607
23
WFU_PickAtlas
67322
24
GIFTI
60772
25
NITRC Computational Environment (NITRC-CE)
58252
26
PANDA: a pipeline tool for diffusion MRI
56197
27
The Neuro Bureau
53087
28
3T DWI test-retest reliability dataset
51061
29
Functional Imaging BIRN
50327
30
Multimodal Visual Consciousness Study Dataset
47065
31
TOADS-CRUISE Brain Segmentation Tools
44875
32
Generalized PPI Toolbox
44439
33
fNIRS Data Analysis Environment
43297
34
QuickNII - Serial section aligner to volumetric atlases
42509
35
Standard Amygdalar fMRI Probe Tasks
42431
36
EEGLAB
40105
37
Network-Based Statistic (NBS)
39175
38
BrainMap Database
38885
39
MIITRA atlas
38525
40
FreeSurfer
37998
41
NeuroImaging Analysis Kit (NIAK)
36234
42
UNC 0-1-2 Infant Atlases
35015
43
Brain Biomechanics Imaging Resources
34636
44
Graph Theory GLM (GTG) MATLAB Toolbox
32692
45
DWI/DTI Quality Control Tool: DTIPrep
32272
46
Homer2
31438
47
TumorSim
31051
48
CBS High-Res Brain Processing Tools
29713
49
Melbourne Subcortex Atlas
29449
50
NYU CSC TestRetest
28577
51
NeuroDebian
28451
52
BrainVisa Morphologist extensions
27915
53
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
27703
54
Anima
27690
55
XNAT Extras
26505
56
4D UNC Neonatal and Infant Cortical Surface Atlases
26376
57
SPHARM-PDM Toolbox
24444
58
Neuroimaging Made Easy Blog
23697
59
SRI24 Atlas: Normal Adult Brain Anatomy
22688
60
BrainMask Volume Processing Tool
22432
61
CANDI Neuroimaging Access Point
22006
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
21818
63
Fast Nonlocal Means for MRI denoising
20670
64
Data Format Tools
20649
65
3DSlicerLupusLesionModule
20489
66
Vaa3D and Vaa3D-Neuron
20371
67
ShapePopulationViewer
19989
68
ANDA
19738
69
Mango
19702
70
MRtrix
19618
71
Surf Ice
19601
72
Group ICA Toolbox (GIFT and EEGIFT)
19282
73
Automatic Registration Toolbox
19130
74
Awake Rat rsfMRI Database
18782
75
MITK Diffusion
18492
76
Hammer And WML Modules for 3D Slicer
18384
77
Subject Order-Independent Group ICA
17948
78
GRETNA
17911
79
AutoSeg
17904
80
Talairach Daemon
17715
81
Human Imaging Database (HID)
17425
82
DCP：Diffusion Connectome Pipeline
17392
83
Diffusion Toolkit / TrackVis
17155
84
Freesurfer fsaverage
17074
85
Multi-site Frequency Drift MR Spectroscopy
17040
86
ENIGMA-DTI pipeline
16989
87
BrainSuite
16904
88
Spatially Constrained Parcellation
16885
89
Computational Morphometry Toolkit (CMTK)
16792
90
NeuroDOT
16630
91
3D Slicer
16351
92
MARS (Multi-Atlas Robust Segmentation)
15660
93
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
15491
94
ReproNim: A Center for Reproducible Neuroimaging Computation
15093
95
FSL
14830
96
Maps4Mipav (Exploratory JIST)
14368
97
3DMeshMetric
14262
98
Artifact Detection Tools (ART)
14099
99
ABSORB for groupwise registration
13932
100
Brainstorm
13849