Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
908568
2
Nilearn
604734
3
ITK-SNAP
431994
4
FCP/INDI PRIVATE SITE
326691
5
1000 Functional Connectomes Project
176566
6
MRIcroGL
174161
7
IIT Human Brain Atlas (v.5.0)
172500
8
BIDScoin
172186
9
CONN : functional connectivity toolbox
163875
10
fMRI-CPCA
98268
11
BrainNet Viewer
96810
12
DTI-TK
91022
13
IBSR
76240
14
BioImage Suite
71511
15
Multi-Modal MRI Reproducibility Resource
65964
16
WFU_PickAtlas
62872
17
age-ility
55848
18
BXH/XCEDE Tools
50521
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
48295
20
Solar Eclipse Imaging Genetics tools
45708
21
PANDA: a pipeline tool for diffusion MRI
44968
22
JIST: Java Image Science Toolkit
44779
23
The Neuro Bureau
44457
24
NIDB - Neuroinformatics Database
41593
25
GIFTI
40286
26
EEGLAB
39853
27
FreeSurfer
37928
28
TOADS-CRUISE Brain Segmentation Tools
37234
29
Functional Imaging BIRN
36809
30
fNIRS Data Analysis Environment
36463
31
3T DWI test-retest reliability dataset
34772
32
NITRC Computational Environment (NITRC-CE)
34161
33
Generalized PPI Toolbox
32973
34
BrainMap Database
28874
35
Homer2
25549
36
Network-Based Statistic (NBS)
24769
37
NeuroDebian
23800
38
Anima
23646
39
BrainFlow
23458
40
BrainVisa Morphologist extensions
22665
41
QuickNII - Serial section aligner to volumetric atlases
22491
42
UNC 0-1-2 Infant Atlases
22062
43
NYU CSC TestRetest
21942
44
Brain Biomechanics Imaging Resources
20393
45
XNAT Extras
20034
46
Mango
18300
47
MITK Diffusion
17718
48
Melbourne Subcortex Atlas
17703
49
Neuroimaging Made Easy Blog
17015
50
Automatic Registration Toolbox
16956
51
Multimodal Visual Consciousness Study Dataset
16942
52
GRETNA
16465
53
Surf Ice
16450
54
Data Format Tools
16388
55
Vaa3D and Vaa3D-Neuron
15505
56
CBS High-Res Brain Processing Tools
15410
57
3D Slicer
15321
58
Diffusion Toolkit / TrackVis
15036
59
Talairach Daemon
14954
60
Spatially Constrained Parcellation
14842
61
SRI24 Atlas: Normal Adult Brain Anatomy
14310
62
Group ICA Toolbox (GIFT and EEGIFT)
14247
63
DCP：Diffusion Connectome Pipeline
14234
64
Freesurfer fsaverage
14102
65
Brainstorm
13793
66
Computational Morphometry Toolkit (CMTK)
13731
67
BrainMask Volume Processing Tool
13565
68
CANDI Neuroimaging Access Point
13553
69
3DSlicerLupusLesionModule
12932
70
dcm2nii
12909
71
BrainSuite
12894
72
MRtrix
12793
73
libminc - Medical Image NetCDF library
12689
74
4D UNC Neonatal and Infant Cortical Surface Atlases
12534
75
FSL
12519
76
Human Imaging Database (HID)
12488
77
Subject Order-Independent Group ICA
12271
78
DWI/DTI Quality Control Tool: DTIPrep
12253
79
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
12039
80
TumorSim
12034
81
Artifact Detection Tools (ART)
11963
82
Hammer And WML Modules for 3D Slicer
11706
83
MIITRA atlas
11453
84
NeuroImaging Analysis Kit (NIAK)
11304
85
BrainVISA
11285
86
Awake Rat rsfMRI Database
11110
87
2008 MICCAI MS Lesion Segmentation Challenge
10997
88
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10905
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
10804
90
ENIGMA-DTI pipeline
10658
91
NODDI Matlab Toolbox
10490
92
SPM for fNIRS toolbox
10441
93
NIfTI
10388
94
Diffusional Kurtosis Estimator
10324
95
Source Information Flow Toolbox
9982
96
Task Independent Fluctuations Discussion
9973
97
MARS (Multi-Atlas Robust Segmentation)
9868
98
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9817
99
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9514
100
SPHARM-PDM Toolbox
9268