Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
944624
2
Nilearn
779543
3
BIDScoin
456045
4
ITK-SNAP
455911
5
FCP/INDI PRIVATE SITE
367846
6
IIT Human Brain Atlas (v.5.0)
207210
7
fMRI-CPCA
200112
8
MRIcroGL
195467
9
CONN : functional connectivity toolbox
185811
10
1000 Functional Connectomes Project
181446
11
BrainNet Viewer
109135
12
DTI-TK
94425
13
IBSR
80213
14
BioImage Suite
76599
15
Multi-Modal MRI Reproducibility Resource
72382
16
BXH/XCEDE Tools
71209
17
age-ility
70018
18
NIDB - Neuroinformatics Database
67743
19
WFU_PickAtlas
65552
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
58652
21
Solar Eclipse Imaging Genetics tools
54018
22
JIST: Java Image Science Toolkit
53538
23
BrainFlow
49327
24
The Neuro Bureau
49216
25
PANDA: a pipeline tool for diffusion MRI
48710
26
GIFTI
46956
27
3T DWI test-retest reliability dataset
42265
28
NITRC Computational Environment (NITRC-CE)
41712
29
Functional Imaging BIRN
41643
30
EEGLAB
40003
31
fNIRS Data Analysis Environment
39578
32
TOADS-CRUISE Brain Segmentation Tools
39300
33
FreeSurfer
37983
34
Generalized PPI Toolbox
36079
35
BrainMap Database
33511
36
Multimodal Visual Consciousness Study Dataset
30979
37
Network-Based Statistic (NBS)
30207
38
QuickNII - Serial section aligner to volumetric atlases
29133
39
Homer2
27688
40
UNC 0-1-2 Infant Atlases
27116
41
NeuroDebian
25933
42
Brain Biomechanics Imaging Resources
25802
43
Anima
25677
44
NYU CSC TestRetest
25389
45
BrainVisa Morphologist extensions
24921
46
XNAT Extras
22642
47
MIITRA atlas
20803
48
Melbourne Subcortex Atlas
20108
49
Neuroimaging Made Easy Blog
19927
50
CBS High-Res Brain Processing Tools
19325
51
Mango
19003
52
4D UNC Neonatal and Infant Cortical Surface Atlases
18472
53
Data Format Tools
18176
54
Surf Ice
18149
55
MITK Diffusion
18100
56
Automatic Registration Toolbox
17972
57
Vaa3D and Vaa3D-Neuron
17716
58
Fast Nonlocal Means for MRI denoising
17520
59
SRI24 Atlas: Normal Adult Brain Anatomy
17420
60
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
17339
61
GRETNA
17261
62
Group ICA Toolbox (GIFT and EEGIFT)
16366
63
CANDI Neuroimaging Access Point
16310
64
Talairach Daemon
16067
65
Diffusion Toolkit / TrackVis
16013
66
3D Slicer
15998
67
BrainMask Volume Processing Tool
15944
68
Spatially Constrained Parcellation
15815
69
NeuroImaging Analysis Kit (NIAK)
15799
70
DWI/DTI Quality Control Tool: DTIPrep
15610
71
DCP：Diffusion Connectome Pipeline
15472
72
Computational Morphometry Toolkit (CMTK)
15267
73
Freesurfer fsaverage
15229
74
3DSlicerLupusLesionModule
15155
75
BrainSuite
14855
76
Awake Rat rsfMRI Database
14484
77
Subject Order-Independent Group ICA
14314
78
TumorSim
14242
79
Human Imaging Database (HID)
14121
80
MRtrix
13834
81
Brainstorm
13829
82
Hammer And WML Modules for 3D Slicer
13753
83
FSL
13509
84
dcm2nii
13140
85
ENIGMA-DTI pipeline
13114
86
SVNTest
12845
87
libminc - Medical Image NetCDF library
12815
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
12730
89
Artifact Detection Tools (ART)
12726
90
SPHARM-PDM Toolbox
12700
91
BrainVISA
11725
92
MARS (Multi-Atlas Robust Segmentation)
11586
93
NIfTI
11497
94
Graph Theory GLM (GTG) MATLAB Toolbox
11472
95
Task Independent Fluctuations Discussion
11469
96
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11410
97
Diffusional Kurtosis Estimator
11240
98
SPM for fNIRS toolbox
11117
99
2008 MICCAI MS Lesion Segmentation Challenge
11104
100
NODDI Matlab Toolbox
10919