Below is a list of the tools and resources that have had forum messages posted directly through NITRC. They are ranked in order starting with the tool/resource that has the most posted forum messages.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank
Tool/Resource name
Posts
1
CONN : functional connectivity toolbox
14728
2
NITRC Community
3322
3
Vaa3D and Vaa3D-Neuron
2582
4
1000 Functional Connectomes Project
1398
5
Seed-based d Mapping (SDM, formerly Signed Differential Mapping)
1393
6
Network-Based Statistic (NBS)
1293
7
Computational Morphometry Toolkit (CMTK)
876
8
dcm2nii
855
9
SPHARM-PDM Toolbox
784
10
MRIcroGL
723
11
BrainNet Viewer
691
12
Generalized PPI Toolbox
584
13
Diffusional Kurtosis Estimator
531
14
MRIcron
522
15
BioImage Suite
434
16
DWI/DTI Quality Control Tool: DTIPrep
373
17
PANDA: a pipeline tool for diffusion MRI
358
18
Surf Ice
256
19
WFU_PickAtlas
243
20
Automatic Registration Toolbox
211
21
NeuroImaging Analysis Kit (NIAK)
199
22
PESTICA & SLOMOCO: physio and motion correction tools
197
23
GIFTI
188
24
SPM for fNIRS toolbox
181
25
The Neuro Bureau
166
26
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
132
27
Wisconsin White Matter Hyperintensities Segmentation Toolbox
123
28
IIT Human Brain Atlas (v.5.0)
122
29
BXH/XCEDE Tools
118
30
Graph Theory GLM (GTG) MATLAB Toolbox
117
31
The Grid Code Analysis Toolbox (GridCAT)
107
32
Artifact Detection Tools (ART)
100
33
JIST: Java Image Science Toolkit
97
34
IBSR
96
35
NIfTI
91
36
NiiStat
90
37
Pipeline system for Octave and Matlab
86
38
Subject Order-Independent Group ICA
84
39
mri_reface
81
40
TOADS-CRUISE Brain Segmentation Tools
69
41
Camino
69
42
Hammer And WML Modules for 3D Slicer
64
43
Nutil - Neuroimaging utilities
57
44
masked ICA (mICA) Toolbox
57
45
SPHARM-MAT
55
46
NITRC Computational Environment (NITRC-CE)
53
47
Robust Brain Extraction (ROBEX)
52
48
QuickNII - Serial section aligner to volumetric atlases
50
49
BetA-Series COrrelation
50
50
Waxholm Space Atlas of the Sprague Dawley Rat Brain
45
51
HAMMER: Deformable Registration
40
52
isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab
38
53
TumorSim
38
54
Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)
36
55
NIDB - Neuroinformatics Database
34
56
Hitachi2nirs
33
57
Robust Biological Parametric Mapping
33
58
Spatially Constrained Parcellation
32
59
Framewise Integrated Real-time MRI Monitoring
29
60
CANDI Neuroimaging Access Point
27
61
CBS High-Res Brain Processing Tools
27
62
Mayo Clinic Adult Lifespan Template and Atlases
27
63
C-PAC
26
64
CIFTI Connectivity File Format
26
65
Solar Eclipse Imaging Genetics tools
26
66
AutoSeg
25
67
UNC-Wisconsin Neurodevelopment Rhesus MRI Database
25
68
BraTumIA (Brain Tumor Image Analysis)
24
69
ShapeWorks
23
70
Resource Ontology Discussion Group
22
71
iBEAT
21
72
SVNTest
21
73
Task Independent Fluctuations Discussion
21
74
GRETNA
19
75
Resting State Hemodynamic Response Function Retrieval and Deconvolution (RS-HRF)
17
76
fNIRS Data Analysis Environment
16
77
SIGMA Rat Brain Templates and Atlases
16
78
BRAINSTools
16
79
DCP：Diffusion Connectome Pipeline
16
80
Conferences, Workshops and Meetings
15
81
HAMMER Suite
14
82
3T DWI test-retest reliability dataset
14
83
JIP fMRI Analysis Toolkit
14
84
Functional Connectivity Community
14
85
PhysIO Toolbox
14
86
QModeling
13
87
Spanish Resting State Network
13
88
GIMME (Group Iterative Multiple Model Estimation)
13
89
INIA19 Primate Brain Atlas
13
90
GLIRT
13
91
Functional Analysis of Diffusion Tensor
12
92
Rosetta Bit
12
93
Best Practices for Research Science
12
94
SVV
12
95
REX
12
96
SpineSegmentation module for 3DSlicer
11
97
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
11
98
SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation
11
99
NeuroPub Visualizer
11
100
Rodent Cortical Thickness Analysis
10