Below is a list of the tools and resources that have had forum messages posted directly through NITRC. They are ranked in order starting with the tool/resource that has the most posted forum messages.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank
Tool/Resource name
Posts
1
CONN : functional connectivity toolbox
14969
2
NITRC Community
3372
3
Vaa3D and Vaa3D-Neuron
2582
4
1000 Functional Connectomes Project
1438
5
Seed-based d Mapping (SDM, formerly Signed Differential Mapping)
1430
6
Network-Based Statistic (NBS)
1312
7
Computational Morphometry Toolkit (CMTK)
876
8
dcm2nii
867
9
SPHARM-PDM Toolbox
784
10
MRIcroGL
736
11
BrainNet Viewer
693
12
Generalized PPI Toolbox
584
13
Diffusional Kurtosis Estimator
531
14
MRIcron
529
15
BioImage Suite
436
16
DWI/DTI Quality Control Tool: DTIPrep
373
17
PANDA: a pipeline tool for diffusion MRI
358
18
Surf Ice
258
19
WFU_PickAtlas
243
20
Automatic Registration Toolbox
211
21
NeuroImaging Analysis Kit (NIAK)
199
22
PESTICA & SLOMOCO: physio and motion correction tools
197
23
GIFTI
188
24
SPM for fNIRS toolbox
181
25
The Neuro Bureau
169
26
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
132
27
Wisconsin White Matter Hyperintensities Segmentation Toolbox
123
28
IIT Human Brain Atlas (v.5.0)
122
29
BXH/XCEDE Tools
121
30
Graph Theory GLM (GTG) MATLAB Toolbox
117
31
The Grid Code Analysis Toolbox (GridCAT)
107
32
Artifact Detection Tools (ART)
100
33
JIST: Java Image Science Toolkit
97
34
IBSR
96
35
mri_reface
94
36
NIfTI
91
37
NiiStat
91
38
Pipeline system for Octave and Matlab
86
39
Subject Order-Independent Group ICA
84
40
Camino
69
41
TOADS-CRUISE Brain Segmentation Tools
69
42
Nutil - Neuroimaging utilities
66
43
Hammer And WML Modules for 3D Slicer
64
44
masked ICA (mICA) Toolbox
57
45
SPHARM-MAT
55
46
NITRC Computational Environment (NITRC-CE)
54
47
Robust Brain Extraction (ROBEX)
52
48
QuickNII - Serial section aligner to volumetric atlases
52
49
BetA-Series COrrelation
50
50
Waxholm Space Atlas of the Sprague Dawley Rat Brain
47
51
HAMMER: Deformable Registration
40
52
isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab
39
53
TumorSim
38
54
Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)
36
55
NIDB - Neuroinformatics Database
34
56
Hitachi2nirs
33
57
Robust Biological Parametric Mapping
33
58
Spatially Constrained Parcellation
32
59
Framewise Integrated Real-time MRI Monitoring
29
60
CBS High-Res Brain Processing Tools
27
61
CANDI Neuroimaging Access Point
27
62
Mayo Clinic Adult Lifespan Template and Atlases
27
63
C-PAC
26
64
Solar Eclipse Imaging Genetics tools
26
65
CIFTI Connectivity File Format
26
66
AutoSeg
25
67
UNC-Wisconsin Neurodevelopment Rhesus MRI Database
25
68
Resting State Hemodynamic Response Function Retrieval and Deconvolution (RS-HRF)
24
69
BraTumIA (Brain Tumor Image Analysis)
24
70
ShapeWorks
23
71
Resource Ontology Discussion Group
22
72
Task Independent Fluctuations Discussion
21
73
SVNTest
21
74
iBEAT
21
75
GRETNA
19
76
DCP：Diffusion Connectome Pipeline
17
77
fNIRS Data Analysis Environment
16
78
SIGMA Rat Brain Templates and Atlases
16
79
BRAINSTools
16
80
Conferences, Workshops and Meetings
15
81
VisuAlign - Nonlinear adjustments after QuickNII
15
82
3T DWI test-retest reliability dataset
14
83
PhysIO Toolbox
14
84
JIP fMRI Analysis Toolkit
14
85
Functional Connectivity Community
14
86
HAMMER Suite
14
87
QModeling
13
88
Spanish Resting State Network
13
89
GIMME (Group Iterative Multiple Model Estimation)
13
90
INIA19 Primate Brain Atlas
13
91
GLIRT
13
92
Functional Analysis of Diffusion Tensor
12
93
Rosetta Bit
12
94
Best Practices for Research Science
12
95
REX
12
96
SVV
12
97
SpineSegmentation module for 3DSlicer
11
98
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
11
99
SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation
11
100
NeuroPub Visualizer
11