Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
BIDScoin
1359293
2
Nilearn
1256136
3
MRIcron
1050388
4
ITK-SNAP
489781
5
FCP/INDI PRIVATE SITE
415671
6
IIT Human Brain Atlas (v.5.0)
269452
7
CONN : functional connectivity toolbox
251772
8
MRIcroGL
220738
9
fMRI-CPCA
215839
10
1000 Functional Connectomes Project
187575
11
BrainNet Viewer
145916
12
BXH/XCEDE Tools
138782
13
NIDB - Neuroinformatics Database
125645
14
age-ility
115964
15
DTI-TK
101937
16
BioImage Suite
100078
17
Solar Eclipse Imaging Genetics tools
95032
18
BrainFlow
92828
19
JIST: Java Image Science Toolkit
92640
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
89004
21
IBSR
86979
22
Multi-Modal MRI Reproducibility Resource
83347
23
GIFTI
68522
24
NITRC Computational Environment (NITRC-CE)
67938
25
WFU_PickAtlas
67898
26
PANDA: a pipeline tool for diffusion MRI
59639
27
Multimodal Visual Consciousness Study Dataset
57377
28
The Neuro Bureau
55583
29
3T DWI test-retest reliability dataset
55573
30
Standard Amygdalar fMRI Probe Tasks
55233
31
Functional Imaging BIRN
54487
32
QuickNII - Serial section aligner to volumetric atlases
50474
33
TOADS-CRUISE Brain Segmentation Tools
49202
34
Generalized PPI Toolbox
48160
35
MIITRA atlas
46181
36
fNIRS Data Analysis Environment
45449
37
BrainMap Database
44410
38
Melbourne Subcortex Atlas
44246
39
Network-Based Statistic (NBS)
41620
40
NeuroImaging Analysis Kit (NIAK)
41325
41
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
41220
42
Brain Biomechanics Imaging Resources
40362
43
EEGLAB
40131
44
DWI/DTI Quality Control Tool: DTIPrep
40087
45
UNC 0-1-2 Infant Atlases
38985
46
Graph Theory GLM (GTG) MATLAB Toolbox
38758
47
FreeSurfer
38008
48
CBS High-Res Brain Processing Tools
38003
49
TumorSim
36128
50
Homer2
33269
51
4D UNC Neonatal and Infant Cortical Surface Atlases
32365
52
NYU CSC TestRetest
31340
53
NeuroDebian
29755
54
BrainVisa Morphologist extensions
29650
55
SPHARM-PDM Toolbox
29528
56
Anima
29358
57
XNAT Extras
28545
58
ANDA
27803
59
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
25973
60
BrainMask Volume Processing Tool
25936
61
SRI24 Atlas: Normal Adult Brain Anatomy
25927
62
CANDI Neuroimaging Access Point
25903
63
Neuroimaging Made Easy Blog
25672
64
Multi-site Frequency Drift MR Spectroscopy
25613
65
ShapePopulationViewer
25014
66
3DSlicerLupusLesionModule
24301
67
AutoSeg
23861
68
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
23252
69
MRtrix
22857
70
Fast Nonlocal Means for MRI denoising
22121
71
Data Format Tools
22045
72
Vaa3D and Vaa3D-Neuron
21955
73
Awake Rat rsfMRI Database
21824
74
NeuroDOT
21723
75
Group ICA Toolbox (GIFT and EEGIFT)
20772
76
Hammer And WML Modules for 3D Slicer
20701
77
Surf Ice
20221
78
Mango
20060
79
Automatic Registration Toolbox
19781
80
Human Imaging Database (HID)
19337
81
Talairach Daemon
18972
82
Subject Order-Independent Group ICA
18913
83
MITK Diffusion
18788
84
ENIGMA-DTI pipeline
18770
85
3D Slicer
18619
86
ReproNim: A Center for Reproducible Neuroimaging Computation
18443
87
Freesurfer fsaverage
18363
88
Computational Morphometry Toolkit (CMTK)
18335
89
3DMeshMetric
18298
90
GRETNA
18170
91
DCP：Diffusion Connectome Pipeline
18117
92
BrainSuite
18081
93
Diffusion Toolkit / TrackVis
17741
94
MARS (Multi-Atlas Robust Segmentation)
17653
95
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
17644
96
Spatially Constrained Parcellation
17431
97
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
17086
98
Neurosynth Compose
16721
99
Maps4Mipav (Exploratory JIST)
16719
100
JIP fMRI Analysis Toolkit
16294