Hi!
I am Brazilian medical student.
I have been trying to process some resting-state data from these patients using CONN toolbox, however, I am struggling with the fact that the lesions are segmented as grey matter. Were you able to solve this problem about the lesion segmentation? I think that maybe we should do the preprocessing steps prior on SPM using lesion masks. By the way, could you please tell us which software you use to make identify stroke lesions?

Thank you in advance for your attention!