Hi Jeff,

Any luck solving using lesion masks in CONN? I saw elsewhere on this forum that you need to modify the TPM.nii file, but I haven't found any sources on how to do so: https://www.nitrc.org/forum/message.php?msg_id=26112 

So far, all I have found is a paper demonstrating that masking a lesion is crucial to analyzing functional connectivity in a brain with a lesion: https://journals.sagepub.com/doi/abs/10....

Thanks,

Matthew