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help > RE: error during Step 5/7: Importing ROI Data
Apr 7, 2020 08:04 AM | Pravesh Parekh - University of Oslo
RE: error during Step 5/7: Importing ROI Data
Hello,
Quick suggestion: it looks like your T1 image was segmented twice before normalization; the wc3c3 would seem to indicate that. Perhaps the analysis partially got over and was rerun? Anyway, the error indicate that there are not enough voxels which survive after erosion step for creation of CSF masks (used for aCompCor denoising). If indeed the segmentation was accidentally done twice, this would be expected. I suggest you check your files to be sure that is not the cause of the error.
Hope that helps
Best
Pravesh
Originally posted by Marianna La Rocca:
Quick suggestion: it looks like your T1 image was segmented twice before normalization; the wc3c3 would seem to indicate that. Perhaps the analysis partially got over and was rerun? Anyway, the error indicate that there are not enough voxels which survive after erosion step for creation of CSF masks (used for aCompCor denoising). If indeed the segmentation was accidentally done twice, this would be expected. I suggest you check your files to be sure that is not the cause of the error.
Hope that helps
Best
Pravesh
Originally posted by Marianna La Rocca:
Hello,
During the import of the ROI data (before seeing the denoting gui) I have this error:
Error using conn_process (line 760)
No suprathreshold voxels in ROI file /ifs/loni/postdocs/mlarocca/fMRI_study/sMRI/wc3c3_*t1mprage.nii after erosion (original file contained 3674 suprathreshold voxels)
Error in conn_process (line 16)
case 'setup', conn_disp(['CONN: RUNNING SETUP STEP']); conn_process([0:4,4.5,5]);
Error in conn (line 5463)
else conn_process(processname); ispending=false;
Error in conn_menumanager (line 120)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
CONN19.b
SPM12 + DEM FieldMap LST MEEGtools
Matlab v.2019b
project: CONN19.b
storage: 5841323.5Gb available
I also tried to remove that 16th subject but I had the same problem with the 17th (the new 16th subject)
Could you help me to understand how to fix this problem?
Thank you,
Marianna La Rocca
During the import of the ROI data (before seeing the denoting gui) I have this error:
Error using conn_process (line 760)
No suprathreshold voxels in ROI file /ifs/loni/postdocs/mlarocca/fMRI_study/sMRI/wc3c3_*t1mprage.nii after erosion (original file contained 3674 suprathreshold voxels)
Error in conn_process (line 16)
case 'setup', conn_disp(['CONN: RUNNING SETUP STEP']); conn_process([0:4,4.5,5]);
Error in conn (line 5463)
else conn_process(processname); ispending=false;
Error in conn_menumanager (line 120)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
CONN19.b
SPM12 + DEM FieldMap LST MEEGtools
Matlab v.2019b
project: CONN19.b
storage: 5841323.5Gb available
I also tried to remove that 16th subject but I had the same problem with the 17th (the new 16th subject)
Could you help me to understand how to fix this problem?
Thank you,
Marianna La Rocca
Threaded View
| Title | Author | Date |
|---|---|---|
| Marianna La Rocca | Apr 7, 2020 | |
| Marianna La Rocca | Apr 11, 2020 | |
| Alfonso Nieto-Castanon | Apr 11, 2020 | |
| Marianna La Rocca | Apr 13, 2020 | |
| Pravesh Parekh | Apr 7, 2020 | |
| Marianna La Rocca | Apr 7, 2020 | |
| Marianna La Rocca | Apr 7, 2020 | |
| Marianna La Rocca | Apr 7, 2020 | |
| Pravesh Parekh | Apr 8, 2020 | |