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help > RE: Setup Pipeline error: "mismatched dimensions"
Aug 1, 2022 08:08 PM | Alfonso Nieto-Castanon - Boston University
RE: Setup Pipeline error: "mismatched dimensions"
Hi Raoul,
Well, in your case I believe the issue may be simply some empty QC_timeseries 1st-level covariate files. Typically those QC_timeseries covariates are filled automatically by the preprocessing steps during the ART (outlier detection) step. Have your data been preprocessed in CONN? If so please check if you got any error message during preprocessing which may explain why the ART step did not get to run/finish correctly
Best
Alfonso
Originally posted by Raoul Hernandez:
Well, in your case I believe the issue may be simply some empty QC_timeseries 1st-level covariate files. Typically those QC_timeseries covariates are filled automatically by the preprocessing steps during the ART (outlier detection) step. Have your data been preprocessed in CONN? If so please check if you got any error message during preprocessing which may explain why the ART step did not get to run/finish correctly
Best
Alfonso
Originally posted by Raoul Hernandez:
Cheers Alfonso,
New to CONN and love it so far (including this helpful forum - very nice!).
I feel like I am having a similar issue with my analysis. Here is the error I get when I select Done. Interestingly, I have no QC_timeseries or scrubbing files after preprocessing.
ERROR: Subject 1 Session 1 first-level covariate QC_timeseries mismatched dimensions (0 rows, while functional data has 200 scans; the number of rows of a first-level covariate should equal the number of scans for this subject/session)
ERROR: Subject 1 Session 1 first-level covariate scrubbing mismatched dimensions (0 rows, while functional data has 200 scans; the number of rows of a first-level covariate should equal the number of scans for this subject/session)
Would you suggest the same resolution for my issue?
Cheers,
Raoul
New to CONN and love it so far (including this helpful forum - very nice!).
I feel like I am having a similar issue with my analysis. Here is the error I get when I select Done. Interestingly, I have no QC_timeseries or scrubbing files after preprocessing.
ERROR: Subject 1 Session 1 first-level covariate QC_timeseries mismatched dimensions (0 rows, while functional data has 200 scans; the number of rows of a first-level covariate should equal the number of scans for this subject/session)
ERROR: Subject 1 Session 1 first-level covariate scrubbing mismatched dimensions (0 rows, while functional data has 200 scans; the number of rows of a first-level covariate should equal the number of scans for this subject/session)
Would you suggest the same resolution for my issue?
Cheers,
Raoul
Threaded View
| Title | Author | Date |
|---|---|---|
| Sascha Froelich | Apr 5, 2017 | |
| Alfonso Nieto-Castanon | Apr 5, 2017 | |
| Raoul Hernandez | Jul 28, 2022 | |
| Alfonso Nieto-Castanon | Aug 1, 2022 | |
| Raoul Hernandez | Aug 3, 2022 | |
| Raoul Hernandez | Aug 20, 2022 | |
| Alfonso Nieto-Castanon | Aug 29, 2022 | |
| Matti Gärtner | Apr 28, 2017 | |
| Sascha Froelich | Apr 11, 2017 | |