Alfonso,

Thank you. I do not get any errors with preprocessing ("Preprocessing finished correctly; Output files imported"). Here is a part of the log window. Maybe I'm overlooking something?

SPM preprocessing job
(1).spm.spatial.realignunwarp.eoptions.rtm = 0
(1).spm.spatial.realignunwarp.data.scans(1) = /mounts/charles/swauswau5001_resting.nii,9
(1).spm.spatial.realignunwarp.data.scans(2) = /mounts/charles/swauswau5001_resting.nii,10
(1).spm.spatial.realignunwarp.data.scans(191) = /mounts/charles/swauswau5001_resting.nii,199
(1).spm.spatial.realignunwarp.data.scans(192) = /mounts/charles/swauswau5001_resting.nii,200

2022-Aug-02 09:37 : Importing results to CONN project
saved /mounts/charles/conn_project01.mat
Preparing functional Center to (0,0,0) coordinates (translation)
Performing functional Center to (0,0,0) coordinates (translation)
Importing results to CONN project
Functional centering translation x/y/z = [-0.75 19.25 -17.25] (Subject 1)
2022-Aug-02 09:39 : Functional centering translation x/y/z = [-0.75 19.25 -17.25] (Subject 16)
saved /mounts/charles/conn_project01.mat
Preparing functional Slice-Timing correction (STC; correction for inter-slice differences in acquisition time)
Performing functional Slice-Timing correction (STC; correction for inter-slice differences in acquisition time)
SPM preprocessing job
(1).spm.temporal.st.scans(1) = /mounts/charles/uswauswau5001_resting.nii,9
(1).spm.temporal.st.scans(2) = /mounts/charles/uswauswau5001_resting.nii,10
(1).spm.temporal.st.scans(191) = /mounts/charles/uswauswau5001_resting.nii,199
(1).spm.temporal.st.scans(192) = /mounts/charles/uswauswau5001_resting.nii,200
2022-Aug-02 10:30 : Importing results to CONN project
saved /mounts/charles/conn_project01.mat
Preparing functional Outlier detection (ART-based identification of outlier scans for scrubbing)
Performing functional Outlier detection (ART-based identification of outlier scans for scrubbing)
Mapping files for session 1...:
...done
Calculating globals...:
...done
Session 1 global statistics - mean: 257.9224 stdv: 0.9133
Outlier detection: 0 identified outliers
Statistics of movement data:
x y z pitch roll yaw norm
mean 0.0020 0.0034 0.0066 0.0001 0.0001 0.0001 0.0214
stdv 0.0015 0.0026 0.0050 0.0001 0.0001 0.0000 0.0108
max 0.0073 0.0127 0.0284 0.0005 0.0004 0.0002 0.0679
Saving SPM regressor file /mounts/charles/art_regression_outliers_auswauswau5001_resting.mat and /mounts/charles/art_regression_outliers_and_movement_auswauswau5001_resting.mat
New analysis mask file saved to /mounts/charles/art_mask_auswauswau5001_resting.nii
New Voxel-wise mean file saved to /mounts/charles/art_mean_auswauswau5001_resting.nii
Importing results to CONN project
Updated 2nd-level covariate QC_ValidScans
Updated 2nd-level covariate QC_InvalidScans
Updated 2nd-level covariate QC_MaxMotion
Updated 2nd-level covariate QC_MeanMotion
Updated 2nd-level covariate QC_MaxGSchange
Updated 2nd-level covariate QC_MeanGSchange
saved /mounts/charles/conn_project01.mat
Preparing functional Direct Segmentation & Normalization (simultaneous Grey/White/CSF segmentation and MNI normalization)
Performing functional Direct Segmentation & Normalization (simultaneous Grey/White/CSF segmentation and MNI normalization)
SPM preprocessing job
(1).spm.spatial.preproc.channel.vols(1) = /mounts/charles/art_mean_auswauswau5001_resting.nii
(1).spm.spatial.preproc.channel.vols(2) = /mounts/charles/art_mean_auswauswau5002_resting.nii
(1).spm.spatial.preproc.channel.vols(15) = /mounts/charles/art_mean_auswauswau5056_resting.nii
(1).spm.spatial.preproc.channel.vols(16) = /mounts/charles/art_mean_auswauswau5058_resting.nii
(1).spm.spatial.preproc.warp.write = [1 1]
(2).spm.spatial.normalise.write.woptions.bb = [-90 -126 -72;90 90 108]
(2).spm.spatial.normalise.write.woptions.vox = [2 2 2]
(2).spm.spatial.normalise.write.subj(1).def = /mounts/charles/y_art_mean_auswauswau5001_resting.nii
(2).spm.spatial.normalise.write.subj(1).resample(1) = /mounts/charles/art_mean_auswauswau5001_resting.nii
2022-Aug-02 10:44 : (2).spm.spatial.normalise.write.subj(1).resample(2) = /mounts/charles/c1art_mean_auswauswau5001_resting.nii
(2).spm.spatial.normalise.write.subj(1).resample(195) = /mounts/charles/auswauswau5001_resting.nii,199
(2).spm.spatial.normalise.write.subj(1).resample(196) = /mounts/charles/auswauswau5001_resting.nii,200
2022-Aug-02 12:06 : Importing results to CONN project
saved /mounts/charles/conn_project01.mat
Preparing functional Label current functional files as part of list of Secondary Datasets ("mni-space data" label)
Performing functional Label current functional files as part of list of Secondary Datasets ("mni-space data" label)
Importing results to CONN project
saved /mounts/charles/conn_project01.mat
Preparing structural Center to (0,0,0) coordinates (translation)
Performing structural Center to (0,0,0) coordinates (translation)
Importing results to CONN project
Structural centering translation x/y/z = [-0.5 18.5 -17.5] (Subject 1)
saved /mounts/charles/conn_project01.mat
Preparing structural Segmentation & Normalization (simultaneous Grey/White/CSF segmentation and MNI normalization)
Performing structural Segmentation & Normalization (simultaneous Grey/White/CSF segmentation and MNI normalization)
SPM preprocessing job
(1).spm.spatial.preproc.channel.vols(1) = /mounts/charles/cwc0cwc0c5001_highres_head.nii
(1).spm.spatial.preproc.channel.vols(2) = /mounts/charles/cwc0cwc0c5002_highres_head.nii
(1).spm.spatial.preproc.channel.vols(15) = /mounts/charles/cwc0cwc0c5056_highres_head.nii
(1).spm.spatial.preproc.channel.vols(16) = /mounts/charles/cwc0cwc0c5058_highres_head.nii
(1).spm.spatial.preproc.warp.write = [1 1]
(2).spm.spatial.normalise.write.woptions.bb = [-90 -126 -72;90 90 108]
(2).spm.spatial.normalise.write.woptions.vox = [1 1 1]
(2).spm.spatial.normalise.write.subj(1).def = /mounts/charles/y_cwc0cwc0c5001_highres_head.nii
(2).spm.spatial.normalise.write.subj(1).resample(1) = /mounts/charles/cwc0cwc0c5001_highres_head.nii
(2).spm.spatial.normalise.write.subj(1).resample(2) = /mounts/charles/c1cwc0cwc0c5001_highres_head.nii
(2).spm.spatial.normalise.write.subj(1).resample(3) = /mounts/charles/c2cwc0cwc0c5001_highres_head.nii
(2).spm.spatial.normalise.write.subj(1).resample(4) = /mounts/charles/c3cwc0cwc0c5001_highres_head.nii
(3).spm.util.imcalc.expression = (i2+i3+i4).*i1
(3).spm.util.imcalc.input(1) = /mounts/charles/wcwc0cwc0c5001_highres_head.nii
(3).spm.util.imcalc.input(2) = /mounts/charles/wc1cwc0cwc0c5001_highres_head.nii
(3).spm.util.imcalc.input(3) = /mounts/charles/wc2cwc0cwc0c5001_highres_head.nii
(3).spm.util.imcalc.input(4) = /mounts/charles/wc3cwc0cwc0c5001_highres_head.nii
(3).spm.util.imcalc.output = /mounts/charles/wc0cwc0cwc0c5001_highres_head.nii
2022-Aug-02 14:55 : Importing results to CONN project
saved /mounts/charles/conn_project01.mat
Preparing functional Label current functional files as part of list of Secondary Datasets ("smoothed data" label)
Performing functional Label current functional files as part of list of Secondary Datasets ("smoothed data" label)
Importing results to CONN project
saved /mounts/charles/conn_project01.mat
Preprocessing finished correctly; Output files imported.


Raoul