open-discussion
open-discussion > RE: Simplest Tool For Overlap Metrics
Sep 1, 2008 02:09 AM | Arno Klein
RE: Simplest Tool For Overlap Metrics
I'm preparing a paper regarding evaluation of brain image
registrations. From one paragraph of the Introduction:
"...Guido Gerig developed the Valmet software tool (http://www.ia.unc.edu/public/valmet/) and Gary Christensen and collaborators are creating the Non-rigid Image Registration Evaluation Project (NIREP) (http://www.nirep.org). The Windows-based Valmet was in 2001 the first publicly available software tool for measuring (as well as visualizing) the differences between corresponding image segmentations. It uses several algorithms to compare segmentations: overlap ratio, Hausdorff distance, surface distance, and probabilistic overlap. The NIREP pro ject “has been started to develop, establish, maintain, and endorse a standardized set of relevant benchmarks and metrics for performance evaluation of nonrigid image registration algorithms.” The initial phase of the project will include 16 manually labeled brain images (32 labeled regions in 8 men and 8 women) and four evaluation metrics: (1) relative overlap (equivalent to the "union overlap" defined in the Materials and methods section), (2) variance of the registered intensity images for an image population, (3) inverse consistency error between a forward and reverse transformation between two images, and (4) transitivity (how well all the pairwise registrations of the image population satisfy the transitivity property). One of the goals of NIREP is to incorporate the metrics used by Valmet (9). Another significant goal is to make all findings available in publications and on their website."
Cheers,
@rno
arno klein
http://www.binarybottle.com
"...Guido Gerig developed the Valmet software tool (http://www.ia.unc.edu/public/valmet/) and Gary Christensen and collaborators are creating the Non-rigid Image Registration Evaluation Project (NIREP) (http://www.nirep.org). The Windows-based Valmet was in 2001 the first publicly available software tool for measuring (as well as visualizing) the differences between corresponding image segmentations. It uses several algorithms to compare segmentations: overlap ratio, Hausdorff distance, surface distance, and probabilistic overlap. The NIREP pro ject “has been started to develop, establish, maintain, and endorse a standardized set of relevant benchmarks and metrics for performance evaluation of nonrigid image registration algorithms.” The initial phase of the project will include 16 manually labeled brain images (32 labeled regions in 8 men and 8 women) and four evaluation metrics: (1) relative overlap (equivalent to the "union overlap" defined in the Materials and methods section), (2) variance of the registered intensity images for an image population, (3) inverse consistency error between a forward and reverse transformation between two images, and (4) transitivity (how well all the pairwise registrations of the image population satisfy the transitivity property). One of the goals of NIREP is to incorporate the metrics used by Valmet (9). Another significant goal is to make all findings available in publications and on their website."
Cheers,
@rno
arno klein
http://www.binarybottle.com
Threaded View
Title | Author | Date |
---|---|---|
David Kennedy | Mar 20, 2008 | |
Ged Ridgway | Apr 2, 2008 | |
Luis Ibanez | Sep 1, 2008 | |
John Pluta | Jul 7, 2008 | |
Angie Laird | Apr 2, 2008 | |
David Kennedy | Aug 28, 2008 | |
Daniel Kimberg | Aug 28, 2008 | |
John Pluta | Aug 28, 2008 | |
Janis Breeze | Aug 28, 2008 | |
Arno Klein | Sep 1, 2008 | |
Luis Ibanez | Sep 1, 2008 | |
David Kennedy | Apr 16, 2008 | |
John Pluta | Jul 7, 2008 | |
David Kennedy | Jul 14, 2008 | |
John Pluta | Jul 14, 2008 | |
Steve Pieper | May 7, 2008 | |
Janis Breeze | May 29, 2008 | |
Blaise Frederick | May 12, 2008 | |
Daniel Kimberg | May 12, 2008 | |
Blaise Frederick | May 12, 2008 | |
David Kennedy | Mar 20, 2008 | |
Blaise Frederick | Mar 20, 2008 | |
Angie Laird | Mar 21, 2008 | |
David Kennedy | Mar 21, 2008 | |