open-discussion > RE: Simplest Tool For Overlap Metrics
Sep 1, 2008  02:09 AM | Arno Klein
RE: Simplest Tool For Overlap Metrics
I'm preparing a paper regarding evaluation of brain image registrations. From one paragraph of the Introduction:

"...Guido Gerig developed the Valmet software tool (http://www.ia.unc.edu/public/valmet/) and Gary Christensen and collaborators are creating the Non-rigid Image Registration Evaluation Project (NIREP) (http://www.nirep.org). The Windows-based Valmet was in 2001 the first publicly available software tool for measuring (as well as visualizing) the differences between corresponding image segmentations. It uses several algorithms to compare segmentations: overlap ratio, Hausdorff distance, surface distance, and probabilistic overlap. The NIREP pro ject “has been started to develop, establish, maintain, and endorse a standardized set of relevant benchmarks and metrics for performance evaluation of nonrigid image registration algorithms.” The initial phase of the project will include 16 manually labeled brain images (32 labeled regions in 8 men and 8 women) and four evaluation metrics: (1) relative overlap (equivalent to the "union overlap" defined in the Materials and methods section), (2) variance of the registered intensity images for an image population, (3) inverse consistency error between a forward and reverse transformation between two images, and (4) transitivity (how well all the pairwise registrations of the image population satisfy the transitivity property). One of the goals of NIREP is to incorporate the metrics used by Valmet (9). Another significant goal is to make all findings available in publications and on their website."

Cheers,
@rno

arno klein
http://www.binarybottle.com

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David Kennedy Mar 20, 2008
Ged Ridgway Apr 2, 2008
Luis Ibanez Sep 1, 2008
John Pluta Jul 7, 2008
Angie Laird Apr 2, 2008
David Kennedy Aug 28, 2008
Daniel Kimberg Aug 28, 2008
John Pluta Aug 28, 2008
Janis Breeze Aug 28, 2008
RE: Simplest Tool For Overlap Metrics
Arno Klein Sep 1, 2008
Luis Ibanez Sep 1, 2008
David Kennedy Apr 16, 2008
John Pluta Jul 7, 2008
David Kennedy Jul 14, 2008
John Pluta Jul 14, 2008
Steve Pieper May 7, 2008
Janis Breeze May 29, 2008
Blaise Frederick May 12, 2008
Daniel Kimberg May 12, 2008
Blaise Frederick May 12, 2008
David Kennedy Mar 20, 2008
Blaise Frederick Mar 20, 2008
Angie Laird Mar 21, 2008
David Kennedy Mar 21, 2008